Scomber scombrus (Atlantic mackerel): 133984852
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Entry
133984852 CDS
T10651
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03030
DNA replication
ssco03410
Base excision repair
ssco03420
Nucleotide excision repair
ssco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133984852 (rfc4)
03410 Base excision repair
133984852 (rfc4)
03420 Nucleotide excision repair
133984852 (rfc4)
03430 Mismatch repair
133984852 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssco03032
]
133984852 (rfc4)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133984852 (rfc4)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133984852 (rfc4)
DNA replication proteins [BR:
ssco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133984852 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
133984852 (rfc4)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
133984852 (rfc4)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133984852 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
133984852 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_22
AAA_assoc_2
AAA_30
AAA_11
AAA_16
ResIII
DUF815
Gp44_lid
AAA_28
Mg_chelatase
AAA_14
AAA_24
SLFN-g3_helicase
RuvB_N
AAA_5
AAA_19
DNAX_ATPase_lid
Cdc6_lid
AAA_7
Motif
Other DBs
NCBI-GeneID:
133984852
NCBI-ProteinID:
XP_062280319
LinkDB
All DBs
Position
8:complement(3212675..3219030)
Genome browser
AA seq
358 aa
AA seq
DB search
MQAFLKGGTVQATRPQKDKTAAGPSSEKKARPMPWVEKYRPKCVDDVAYQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRQKVKN
FAQLTVAGTRTDGKSCPPFKIIILDEADSMTGPAQASLRRIMEKESRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLANQIQEQRLLDICEKEKLKYTKESIAALVKVSEGDLRKAITFL
QSAARLNVDKEISERTIIEIAGVVPPKMIDNLLQICFKGTFEKLEVAVRKMVDEGYAATQ
ILSQLHESIIEQDLNDKQKSAITEKMAVVDKCLADGADEYLQMLSLCSLIIQQSSQNN
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctttttaaagggagggactgtccaggctaccagacctcagaaagacaagaca
gcagcaggacccagctcagagaagaaagccagacctatgccatgggtagaaaaatatagg
ccaaagtgtgtggatgacgtggcgtatcaggaggaggtggtagcagtgctgaagaagtca
ctggaaggagcagatcttcccaacttgctgttctacggccctcctggaacaggaaagaca
tccactatcttagctgctgccagagagctttatggtccggagctgtacagacagagggtt
ctggagctcaacgcctccgatgaacgaggcatccaggtcgtcaggcagaaggtcaagaac
tttgctcagctcactgtggctgggactcgcacagacggaaagtcatgtcctcctttcaaa
atcatcatcctggacgaggccgactccatgacaggaccagctcaggcctctctcagacgc
atcatggagaaggagtcccgcaccacccgcttctgtctcatctgtaactacatcagcagg
atcatcgagcctctcacctccagatgttccaagtttcgcttcaagcctttagccaatcag
attcaagagcagcgtctgctggatatctgtgaaaaggagaagctcaaatacacgaaagag
agcatagcagcgttggtgaaggtgtctgaaggagacctgaggaaagccatcaccttcctc
cagagcgccgcccgcctcaacgttgacaaggagatctcagagcgtaccatcatagaaata
gccggggtcgtccctcccaagatgattgacaacttgcttcagatctgctttaaaggaaca
tttgagaagctggaggtagcagtcaggaaaatggtggatgaaggctacgcagccacacag
atcctcagtcagctccacgagtccatcatagagcaggacctcaacgacaagcagaagtca
gccatcacagaaaaaatggcggtggtggataagtgcctggcagacggtgcagatgagtac
ctacagatgttgagtctgtgttcactcatcatacagcagtcctcccagaacaactga
DBGET
integrated database retrieval system
