Scomber scombrus (Atlantic mackerel): 133985458
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Entry
133985458 CDS
T10651
Symbol
rapgef2b
Name
(RefSeq) rap guanine nucleotide exchange factor 2 isoform X1
KO
K08018
Rap guanine nucleotide exchange factor 2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04010
MAPK signaling pathway
ssco04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133985458 (rapgef2b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
133985458 (rapgef2b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
PDZ_6
cNMP_binding
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
133985458
NCBI-ProteinID:
XP_062281068
LinkDB
All DBs
Position
9:complement(7700898..7810476)
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AA seq
1640 aa
AA seq
DB search
MASYVDNSFRQAVMMNPADRTQQDLEIVYSYLHGMEALSNLREHQLRIMCETVRYERHEA
NEVLYYPDDIGSCWYILLSGSVFIKESMFLPRSSFGKRSAGSLRRGCECIVLEPSEMIVV
DYMDENEEYFQRQASHRQSRRRFRKINQKGERQTIIDTVDPYPTGKPPIARGYHTLPADF
SRLHLADGLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATENEPGDMDLSGLPETAVDS
EEDDDEEDIERASDPLMSRDIVRDCLEKDPMDRTDDDIEQLLEFMHQLPAFANMTMSVRR
ELCAVMVFAVVERAGTIVLNDGEELDSWSVILNGSVEVTYPDNRTETLCMGNSFGVSPTM
EKEYMKGVMKTKVDDCQFVCIAQQDYCCILNQVEKNMQKVEEEGEIVMVKEHRELDRTGT
RKGHIVIKGTPERLTMHLVEEHSVVDPTYIEDFLLTYRTFLSSPMVVGKKLLEWFHDSSL
RDKVTRVVLLWVNNHFNDFEGDTAMTRFLEEFENNLEKEKMCGHLRLLNIACAAKAKPRL
VTLTKPSREAPLAFSLLGGQEKGFRIFIDAVEAGSKAAEAGLKRGDQILEVNGQNFENVQ
LIKANEILKNNTHLSITVKTNLLVFKDLLTRPEHDHDMDGEEEHDRKNGAPHLPKIGDIK
KASRYSIPDLAVDVEQVMGLEKVSKKAKANTVGGRNKLKKIFDKTLTSILPPKPYNDVCV
GQSQDDSIVGMKQSKQIPPALPVSGNLSSSNPDLLQSHHRILDFSNQPVPVILNMSDQVL
RVFKADQQSRYIMIGKDTTAKEVVAQAIREFALTAAPEAYSLCEVSVTPEGVIKQRRLPD
QLSKLADRIQLSGRYYLKSNMETETLCSDEDAQDLLREAQISLLQLSTVEVATQLSMRAF
ELFCAIEPTEYIDDLFKLRSKTGSASLKRFEEAINLETFWVATEVTREPNQLKRMKTIKH
FIKIALHCRECKNFNSMFAIISGLNLAPVSRLRGTWEKLPSKYEKLFGDLQDLFDPSRNM
AKYRNVLNNQNLQPPIIPLFPVIKKDLTFLHEGNDSKVDGLVNFEKLRMIAKEIRHVGRM
ASVNMDPALMFRTRSLSQGSANAAVLDVTQTGGHKKRVRRSSFLNAKKLYEDAQMARKVK
QYLSNLSLETNEESLQTLSIQCEPSISTLPKNAGGKRPDTSPVVSRAASQQRGQLAKGNQ
ALQVPAVALYPSRKKVPVKDLPPFGTSSPQSLKKILSLSEEGNERHRRQPEDTVSNASSQ
LSSPPTSPQSSPKKGYNRMGDAYSDSGHSEISSRSSLVSNSSFDMAQEERRLRHSGGIGE
SHLGGPRLERRATTDPDQYSLGSYSSMQDCRGIYAGCPTVLSSPSSEELTQDQGDRVSLD
AADSGRGSWTSCSSGSHDNIQTMQQGRSWETLAFGGGGGGIVGLPPGGPEALLGGPAALW
AAQARGSWASASSSSSSAAYWGEDSEGDTGTIKRRGGKDVNADPETSSITSTGSEEAKQL
GRPSPSPITAGGKGLITRKESRYREPPPTPPGYTALTISDLAEGQHPAPPVPTSTATHSG
RRPPDYTTALQRSRMVTQSPDSHQAHQGAKQRAGGLHRTRSPAEEQEPEEEEEGESLSSK
LVALRKPKPVAQHTPETPRP
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttatgtggataacagctttcggcaggctgtgatgatgaatccggctgatagg
acgcaacaggacctggagatcgtctactcttatctccacggcatggaggccttgtccaac
ctgcgagagcaccagctgaggataatgtgtgagacggtgcgttatgagagacacgaggcc
aatgaagtgctatactaccccgacgacattggaagctgctggtacatcctgttatctggc
tccgtcttcatcaaggagtccatgttcctgcccagaagcagttttgggaagcggtcggca
ggcagcctgcgacgtggatgtgagtgcatcgtcctggaaccatcagagatgattgtggtg
gactatatggatgaaaatgaggagtacttccagcggcaagcctcgcacagacagtcccgt
cggcgctttcggaagatcaaccagaaaggggagaggcagacaatcatcgacaccgtggat
ccgtatcccaccggaaagccacccatagcccgggggtaccacacgctccccgcagacttc
agcagacttcacctggccgacggcttgcacccacaggtgacccacgtctcctccagccac
tcaggatgtagtatcaccagcgactctggaagcagcagcctgtcagacatttaccaggcc
acagagaacgagccaggtgacatggacctcagtggcctgccagaaactgcagtcgactcc
gaggaggacgatgatgaggaggacatcgaaagagcttcagatcccctcatgagtcgagac
atcgtccgggactgcctggagaaggacccaatggacagaactgacgatgacatagagcaa
ttactggagttcatgcatcaactgccagcatttgccaacatgaccatgtcagtgaggagg
gaactctgcgccgtcatggtttttgctgtagtcgaacgcgccggcaccatcgttctcaat
gatggagaggagctggactcatggtcggtgattctgaacggttcggtggaggtgacgtac
cccgacaaccggacagagaccctttgtatggggaacagcttcggggtatcaccaaccatg
gagaaggaatacatgaagggcgtcatgaagaccaaggtggacgactgccagtttgtgtgt
atagcccagcaggactactgctgcatcctcaaccaggtcgagaagaacatgcagaaggtc
gaagaggaaggggagatcgtcatggtgaaggaacaccgcgaactggaccgcactgggaca
aggaaaggacacattgttattaagggcacaccggaacgtctcaccatgcacctagtggag
gaacactcagtggtggaccccacctacattgaggacttcctgttgacctacaggaccttc
ctctcaagccccatggtcgtgggcaagaagctcctggagtggttccacgactccagtctc
agggacaaggttacacgggtagtcttgctgtgggtaaacaatcacttcaacgactttgag
ggtgacactgccatgacacgctttctggaggagtttgaaaacaatctggagaaagaaaaa
atgtgtgggcacctcagactgttaaacatagcatgtgctgctaaagccaagccacggctg
gtgacattgaccaagccgtccagggaggctccattggccttcagtcttctcggaggtcag
gagaaaggtttccgcatcttcattgatgctgtggaggccgggagcaaggcagcagaagct
ggccttaagcgtggagatcagatcttggaggtcaacggacagaactttgagaatgtccag
ctcatcaaagccaatgagattctgaagaacaacacccacttgtccataactgtgaaaaca
aatcttttagtgtttaaagacctgctaaccaggccagaacatgaccatgacatggatggt
gaggaggagcacgacagaaagaacggggcaccccaccttccaaagattggggacatcaag
aaggccagccgctactccatccccgacctggcagtggatgtggaacaggttatgggcttg
gagaaggtcagcaagaaggcaaaggccaacacggtgggaggacgcaacaagcttaagaag
atcttcgacaagacactcaccagcatcctgcctcccaaaccatacaatgacgtttgcgtt
ggccaatcgcaggacgacagcattgtggggatgaagcagtccaaacagatcccaccagct
ctgcctgtcagcggcaacctctcgtcgtcaaacccagatcttctgcagtctcaccaccgc
atcctcgacttcagcaaccagcctgtcccagtgatactgaatatgtcagaccaggtatta
cgagtcttcaaggcggatcagcagtctcggtacatcatgatcgggaaggacaccacggct
aaggaggtggtggcccaggccatcagggagtttgccctgaccgcagcaccggaggcttat
tcgctgtgcgaggtctctgtcacgccagagggcgtcatcaaacagaggcggttacctgac
caactctctaaactagcagacaggattcaactaagtggcagatactacctaaagagcaac
atggagacagagacgttatgttcggatgaggacgcccaggacctccttcgagaagctcag
atctccctgttgcagctcagtacggtggaggtggccacacagctgtccatgcgggccttt
gaactgttctgtgccatcgagcccacagaatacatcgacgacctgttcaagctgcgctcc
aagaccggctcggccagcctgaagcgctttgaggaggccatcaacctcgagaccttctgg
gtggccacagaggtgacgcgggagcctaaccagctcaaacgcatgaagaccatcaagcac
ttcatcaagatcgccctgcactgccgcgagtgcaagaacttcaactcaatgtttgcaatc
atcagcggtctaaacctggctccagtctccagactgaggggaacatgggagaaactacct
agcaaatatgagaagctgtttggggatctgcaagacctcttcgacccttccagaaacatg
gccaagtataggaacgttctcaacaatcagaacctccagccaccaatcatccccctgttc
cccgtcatcaagaaggacctcactttcctacatgaaggcaatgactctaaagtggatggt
ctggtgaactttgagaagctgaggatgattgccaaagaaattcgccatgttggtcgcatg
gcctctgttaacatggaccctgccctcatgtttaggaccaggtctctaagccagggtagc
gccaatgcggcagtgctcgacgtcacccagacaggcgggcacaagaagcgggtgcgacgc
agctcattcctgaatgccaaaaagctttacgaggatgcccagatggccaggaaggtcaaa
cagtatctgtccaatctcagcctggaaactaacgaggagagtctgcagacgctctcgata
cagtgtgaaccctccataagtacactgcccaagaacgctggtgggaaacgaccagacacc
tcaccagtcgtctccagagctgccagccaacagaggggccagctggccaaaggaaaccag
gccctgcaggtcccagctgtggccctgtacccatcccgaaagaaagtgccagtcaaggat
ctgccacctttcggcaccagttccccccagtctctgaagaagatcctgtctctgtcagag
gaggggaacgaaaggcacagaaggcagccagaggacaccgtgtccaacgcctcctcccag
ctctcctcccctcccacctccccccagagctcgcccaagaagggctacaacaggatggga
gatgcctactcagactccggtcatagtgagatctcctctcgctccagtctcgtcagtaac
tcctctttcgacatggcccaagaagaaaggagactccgtcattccggaggaatcggagaa
tcccacctcgggggaccacgactggagcgaagagcaaccaccgatcctgaccagtacagc
ctgggatcatattcatcaatgcaagactgtcgaggcatttacgccggctgccctacggtg
ctctcctcacccagttcagaggaactgactcaggatcagggtgatcgtgtttccctcgat
gctgcagacagcggccgcggctcctggacttcctgctcctctggttcccacgacaacatc
cagaccatgcagcagggacgtagctgggagactctggcctttggcggaggcggaggtggc
atcgtagggctccctcctggcggaccggaggccttattaggaggacctgctgcactgtgg
gcagcccaagccagggggagctgggcatctgccagctcctcctcctcctcagccgcgtac
tggggagaggactctgagggtgacaccggcaccattaagaggagaggagggaaggatgtc
aacgctgacccagaaacaagtagcatcacatccaccggatcagaagaagccaagcagctc
ggtcggccctccccatcaccgatcaccgctgggggtaaaggcctcatcacacggaaagag
agccgttaccgtgagcctcccccaacaccaccaggctacactgccctgaccatctctgac
ctcgccgaaggacagcacccagctccgcctgttcccacgtccacggcgacccactctggc
cgccggccaccggactacaccacagctctgcagcgctcgcgcatggtcacccaatcgcct
gactcccaccaggctcaccagggggccaaacagcgggcgggcggcctccaccgcactcgc
tcaccggctgaggaacaagagcccgaggaggaagaggagggtgagtccttgtcttccaaa
ctagtcgctctgaggaagccaaagccagtggcacagcatacacctgagactcccagacca
tga
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integrated database retrieval system
