Scomber scombrus (Atlantic mackerel): 133985775
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Entry
133985775 CDS
T10651
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
ssco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133985775 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133985775 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133985775 (prpf19)
04121 Ubiquitin system [BR:
ssco04121
]
133985775 (prpf19)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133985775 (prpf19)
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133985775 (prpf19)
Spliceosome [BR:
ssco03041
]
Complex B
Other components
Prp19 complex
133985775 (prpf19)
Complex C
Prp19-CDC5 complex
133985775 (prpf19)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
U-box type E3
133985775 (prpf19)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
133985775 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Prp19
Beta-prop_WDR3_2nd
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR41
PEP5_VPS11_N
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_Vps41
U-box
Beta-prop_DCAF4
PROPPIN
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_ACSF4
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
B-prop_COPA_B_2nd
Cytochrom_D1
Tricorn_2nd
Ge1_WD40
zf-Nse
Peripla_BP_2
ATG16
Cep57_MT_bd
Motif
Other DBs
NCBI-GeneID:
133985775
NCBI-ProteinID:
XP_062281466
LinkDB
All DBs
Position
9:complement(18336908..18342913)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQTAPASQPAAAGAGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILSLDLCPSDTNKVLT
GGADKNVVVFDKNEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDTTIRVWSVTGGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGKVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT
GVAFGENAQFLTSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggtttgtgcaatctccaacgaggtcccagagcacccgtgcgtctctccggtg
tcaaaccaggtgtttgagcgccggctgattgagaagtacatagctgagaatgggacggac
ccgatgaatggacaacctctgtcggaggagcagctcgtagatattaaagtgtcacatcct
attagaccaaaggcgccatcagcaacaagcattcctgccatcctcaagtctctccaagat
gagtgggatgctgttatgcttcacagcttcaccctgaggcagcagctgcagacaactcgc
caagagctgtcccatgccctctaccaacatgatgccgcctgcagagtcatcgctcgactc
accaaagaggtcactgctgcaagagaagctcttgccacactcaaaccccaggctggattg
gttgcccctcagacagcccccgcctctcagccagctgcagcaggtgctggtggagaacct
atggagattagtgaacaggtgggaatgaccccagagatcatccagaagcttcaagacaaa
gccaccatcctcaccacagagagaaagaagagaggaaaaactgtgccagaggagctggtt
agagctgaggatctcagcaaataccgccaagtggcctcccatgctggtcttcatagtgcc
agtgtacctggtattctgtctctggatctgtgtccttcagacaccaacaaagtgctcacc
ggtggagctgataagaacgtggttgtgtttgacaagaatgaggagcagattgttgcaaca
cttaagggtcacaccaagaaggtcacctctgtcatttaccatccatcccagtcggtggtc
ttctctgcgtctccagacaccaccatccgtgtgtggtccgtcaccgggggcaactgtgtc
caggtggtgcgtgcccatgaggcaggtgtcactggactgtccctgcatgctactggggac
tacctgctcagctcctctgaggatcagtactgggccttttctgacatccaaactggtaaa
gtcctcaccaaagtcactgatgagagcgctggctgtgctctcacctgtgctcagttccac
cctgatggtctcatctttggtaccggaacggctgactcccaaatcaagatctgggatctg
aaggagcgcaccaacgtggccaacttccccggccactctggccccgtcacctccattgcg
ttctctgagaacggatactatctggctacaggtgcccaggatagctctctgaaactgtgg
gatctgaggaaactgaagaacttcaagaccatcaccctggacaacaactatgaggtgaag
tccctcgtgtttgaccagagcggtacctacttggctgtaggagggtctgacatccgtgtc
tacatctgcaaacagtggtctgaggtcctcaacttcaccgaccacacaggattggtgact
ggcgtggctttcggagagaacgctcagttcttgacctctgcaggaatggacagaagtctc
aaattctacagtttgtag
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