Scomber scombrus (Atlantic mackerel): 133985814
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Entry
133985814 CDS
T10651
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
133985814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133985814
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133985814
Spliceosome [BR:
ssco03041
]
Complex C
Other components
Complex C specific factors
133985814
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
Utp25_C
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133985814
NCBI-ProteinID:
XP_062281511
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All DBs
Position
9:complement(20086990..20096351)
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AA seq
614 aa
AA seq
DB search
METENRPKKRSNGEEDRSGSEGSEDDDYVPYVPVKIRKHQMLQKMLRLRGKAVDEEQKDS
GEEQRDEDEGLGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVKEGRALMS
VKEMAKGIIYDDPIKTSWKAPRYILNMPDTRNDRVRKKFHILVDGDGIPPPIKSFREMKL
PPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPIIMFSLEQEK
RLPFFKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQLRTALCIGGMSVKEQME
VVKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL
QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLMDL
KALLIEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgaaaatcgacccaaaaagagatccaatggggaggaggacaggtctggctct
gagggatcagaggatgatgactatgttccatacgttcctgtcaaaataaggaaacaccaa
atgcttcagaaaatgttgcgtctgcgaggaaaggcagtggacgaggaacagaaggacagt
ggggaggagcagagggacgaggatgagggtctcggtccacgctccaatgtcagtctcctt
gaccagcatcagcacctcaaggaaaaagcagaagcccgaaaggagtcagccaaggagaag
cagctgaaagaggaagagaagattctggagagtgttaaagagggcagagctttgatgtcc
gtgaaggaaatggccaaaggtatcatatatgatgatccaatcaaaactagctggaaggcg
ccacgctacattctgaatatgcccgacactagaaatgaccgagtgaggaagaagtttcac
atccttgttgatggagatggcatccctcctccaatcaaaagcttcagggagatgaagctt
ccaccagcaattctgaaaggtctgaagaagaagggcattgtacacccaacaccaattcaa
attcaaggaatccctacagttctgtcaggtcgggacatgattggcatcgcctttactggc
tctggaaagactttggtcttcactctgcccatcatcatgttttccctggagcaggagaaa
aggctgcctttcttcaagagagagggtccatatggactcatcatctgtccttcacgtgag
ttggcgagacagacacatggcatcatagaatactactgcaaactgctggaggaggaggga
gctccccagttgcgcactgccctctgcatcggagggatgtctgtcaaggagcagatggag
gtagttaaacatggtgtccacatgatggtcgccacccctgggcgtctgatggacttgttg
cagaagaagatggtgagtctggacatctgtcgctacttggccctggatgaggctgatagg
atgattgacatgggctttgaggaggacatcaggaccattttctcctatttcaagggacaa
agacaaaccctgctcttcagtgccactatgccaaagaagatccagaactttgcaaagagc
gctcttgtcaaacccatcacgattaacgtgggcagggcaggagctgccagcttggatgtc
atccaggaagtggaatacgtcaaagaggaggccaagatggtgtacctgctggagtgtctc
cagaaaacaccacctcctgtgttgatatttgctgagaagaaggctgatgtagatgccatc
catgagtatctactgctaaaaggggtggaggcagtggccatccatggaggaaaggatcag
gaggaaagaacaaaagccatagaggcattcaaagaaggaaagaaagatgtcctggttgcc
acagacgtggcctccaagggtctggatttcccagcaatccagcatgtagtgaattatgac
atgcctgaggagatagaaaactatgtccatagaattggaagaactggacgatctggtaaa
actggtattgccacaacattcatcaataaaggctgtgatgagtcagtattgatggatctg
aaagccctgcttattgaagccaagcagaaggttccgccagtcctccaggtgctccagacg
ggagacgagaccatgttggatattggaggggagaggggctgtacgttttgcggtggtctc
ggtcatcgtattacagactgtcctaagttggaggccatgcagaccaagcaggtcaccaac
attgggcggaaagactacctggctcatagctcaatggacttttaa
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