Scomber scombrus (Atlantic mackerel): 133985921
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Entry
133985921 CDS
T10651
Symbol
slit3
Name
(RefSeq) slit homolog 3 protein
KO
K06850
slit 3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133985921 (slit3)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Axon guidance molecules
133985921 (slit3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
Laminin_G_1
hEGF
LRR_9
EGF_TEN
LRRCT
LRR_14
EGF_Teneurin
JAG1-like_EGF2
EGF_DL_JAG
EGF_2
LRR_EndoS
LRRCT_2
Motif
Other DBs
NCBI-GeneID:
133985921
NCBI-ProteinID:
XP_062281648
LinkDB
All DBs
Position
9:9808622..10057602
Genome browser
AA seq
1534 aa
AA seq
DB search
MPPTGQKKRAAHCRIWALIFALIACAVSVDGCPHKCSCSGSHVDCQGLGLKTVPKGIPRN
AERLDLNRNNITRITKVDFSGIKNLRILHLEDNQISVVERGAFQDLRLLERLRLNRNKLQ
FLPELLFQSNPKLGRLDLSENQIQAVPRKAFRGITSVKNLQLDSNHISCIEDGAFRALRD
LEILTLNNNNITLIPLSSFNHMPKLRTLRLHSNNLHCDCHLSWLSDWLRARRGLAPFTQC
MAPAHMRGLNVPDVQKKDFVCNGPAQTESRTCVPQVAICPPSCTCNNNIVDCRRKGITEI
PANLPEGIVEIRLEQNLIKSVTAGAFSAYKKLKRIDLSKNQISDIAADAFSGLRSLTSLV
LYGNKITELPKGLFDGLASLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKG
LFTPLRSIKTLHLAQNPFMCDCHLKWLADYLFDNPIETSGARCSHPRRLANKRISQVKGK
KFRCTGQEDYRSRLSGECFQDLVCPEKCRCEGTVVDCSNLKLTRLPPHIPEHTTDLRLND
NEIAVLEAAGTFKKLPNLRKINLSNNKLRDIREGAFDGSGGVLELLLTGNKLTGLQGRMF
RGLTGLKTLMLRSNQISCIDNTTFTGLSSVRLLSLYDNRITSIAPGAFSTLHSLSTINLL
SNPYVCDCHLAWLGQWLKKTRVVSGNPRCQKPAFLKEIPIQDVATPDFTCDGVEDNGCLP
TSGCPDVCTCSDSVVRCSNRGLHSLPKGIPKDTTELYLEGNMLTSVPKELVGLKQLSLVD
LSNNSISTLGPYTFNNMTQLATLILSYNQIRCIPVHAFDGLKSLRLLTLHGNDLSTIPEG
AFNHLTSLSHLALGANPLYCNCDLRWLSQWVKAGFKEPGIARCTGPPDMADRLLLTTPLN
RFQCKGPVDISLMSKCAPCLAAPCQNNGTCVSDATGSYHCTCPFGFKGQNCEIPINACIS
FPCTNGGTCHIQPGLQDYFSCVCPPGFEGQRCEVNPDDCEDNDCENNSTCIDGINNYTCV
CPPNYTGDLCEEVVDPCLHGFDPCQHESKCVHVGRSYRCECLPGYVGQHCEQDYNDCLEN
KCQHGAECVDAVNGYTCVCKEGFSGLFCENPPPMILLQTSPCDQSDCQNGAQCLVVAGEP
ICRCMPGFYGNKCDKMATVHFLGRDGYVELPGTKLRPTAHISLQVATAKDNGILLYKEDH
DPLALELYQGHIRLIYDIANYPPTTVYSVETVNDGLFHTVELLIQNRSLSLVVDNGAPKS
LGKLARQPSVDHNTQLYIGGVPSQVVALGLRPGPERSPQAFNGCIHNVKINGEPQDLSYR
ATGGRPQGADGILSGCHTCSVCAQGACREGGETGVTCDCPPGRSGTLCDQTTAPTPCQNS
RCVHGMCVPKGQSYSCQCSEGYQGQFCDRRQEPPACRGQRCGGHGECRVSEAGEPVCHCQ
PGYTGPSCNPEVTCQGEMVREQLKRHHPMRTCTSTSKIPRMDCPRSCQTAAPPGVCCGVT
KSRKRKVVFRCSDGTSYSEEMETALECGCSKCPL
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atgcctccgaccgggcagaagaagcgggctgcgcactgccggatttgggctctgattttc
gcgttgattgcatgcgctgtgtcggtagatggatgcccacacaagtgcagctgctccggg
tcgcatgtggactgccagggtctgggtttgaagacggtgcccaaaggaataccgaggaat
gccgagcgcctggatttgaacagaaacaacatcaccagaatcactaaagtggatttctct
ggcatcaagaacctcagaattcttcatctggaggacaaccaaatcagtgttgtagagaga
ggagcctttcaagacctcagactgctggagagacttcgtctgaacagaaacaaactccag
tttctcccagagcttctcttccagtccaaccccaaactaggacgactagacctcagtgag
aaccagattcaggcggttccaaggaaagctttcagaggaatcaccagtgtcaagaacctg
caactggacagcaaccacatcagctgcatcgaagatggagctttccgagcgctgcgcgat
ctggagattctcaccctcaacaacaacaacatcaccctcatccccctgtccagcttcaac
cacatgcctaaactgcggacacttcgtctgcactccaacaaccttcactgtgactgtcac
ctgtcctggctctctgattggctcagggcaaggcgaggcttggctcccttcacccagtgc
atggcccccgcccacatgaggggcctcaatgtcccagatgtgcagaaaaaggattttgtc
tgcaatggtccagcccagacagagtcgaggacttgtgtacctcaggtagccatatgtccg
cccagctgcacctgcaacaacaacatagtggactgcagacgtaaaggcatcactgaaata
ccagccaacctcccagagggaattgtggagattcgtttggagcagaacttgattaaaagt
gtcacagcaggagccttttctgcctacaagaagcttaaaagaattgacttgagtaagaac
cagatttctgacattgcagccgatgctttcagcggccttcgctcactcacctcgctggtg
ttgtacggcaacaagatcactgaactgcccaagggattgtttgatggactggcttccctg
cagctactactgctgaatgccaacaaaatcaactgtctgagagtcaacaccttccaagac
cttcagaacctcaacctgctatcactgtatgacaacaaactccaaacgatcagcaaagga
cttttcacccctctacgttccataaagactcttcatctggcccagaatcccttcatgtgt
gactgtcacctgaagtggctggctgactacctgttcgacaacccaatcgagaccagtgga
gcacgctgcagccaccctagaaggctggccaacaaacgtatcagccaagttaaaggcaaa
aagttcaggtgcacaggtcaggaagactatcgtagccgtctgagtggcgagtgtttccag
gatctggtatgcccagagaaatgtcgctgtgaaggcaccgtggttgactgctccaatctc
aaactgacccgtttacctccacacatccctgaacacaccacagacctgcggttaaacgac
aatgagattgctgtcctggaggctgcagggacgtttaagaagctgcctaacttgaggaag
atcaacctgagcaacaacaagctgcgggacatccgtgagggtgcttttgatgggtcgggt
ggagttctggagctgctgctgactgggaacaagctaactgggctgcagggacgaatgttc
agaggtctaactggcctgaaaactctaatgctgcggagcaaccaaatcagctgcattgac
aacactacgtttaccggtctgagctcagttcgtctgctgtcgctctatgacaacaggatc
accagcatcgccccaggagccttctccaccctgcactcgctgtccactattaacctcttg
tccaacccatatgtgtgtgattgccacttggcctggctgggtcagtggctgaaaaagacc
agggtggtcagtggaaaccctcgctgccagaagccagccttcctgaaagagatccccatc
caggacgtagcaacaccagacttcacatgcgatggtgttgaggataatggttgtcttcct
acgtctggttgtcctgatgtctgcacgtgctcagacagtgtggtgcgatgcagcaacaga
gggctgcactctctgcccaagggcattcccaaggacaccactgaactgtacctggagggt
aatatgctgacatccgtgcccaaggagctggtaggcctgaagcagctgtcgttggtagac
ctgagcaacaacagcatcagtacattgggcccgtacaccttcaacaacatgactcaacta
gccacactcatcctgagttataaccagattcgctgcatcccggtccatgccttcgacggg
ctcaagtcacttcgcctgctaactctccatggcaacgacctttcaactataccagaagga
gctttcaaccatctcacctctctgtcccacctggctcttggtgccaaccccttgtactgt
aactgtgatctgcgctggctctctcagtgggtgaaggctggctttaaagagcctggcatt
gctcgctgtactggacctcctgacatggctgacaggctgctgctcacaactccactcaac
agatttcagtgcaaaggtccagtagatatcagtctcatgtcaaagtgcgccccctgcctg
gcagcaccctgccaaaataatggtacttgtgtgtctgatgccactggatcctaccactgc
acctgtccgtttggatttaagggtcagaactgtgagatacctatcaatgcctgtattagt
ttcccctgcactaatggaggaacatgccacattcagcctggccttcaagactacttcagc
tgtgtgtgtccgccaggttttgagggccagcgctgcgaggtaaatccagatgactgtgaa
gacaacgactgtgaaaacaactccacctgcattgacggaatcaacaactacacctgcgtc
tgtccgcccaactacacaggcgacctgtgtgaggaggtggttgacccctgtctccatgga
ttcgacccctgtcagcatgaatcaaagtgtgtccatgttggtcgcagttacaggtgtgag
tgtttaccaggctatgtgggccaacactgtgagcaggactataatgactgtctggagaat
aagtgtcaacatggagcagagtgtgtggatgctgtcaacggctatacctgcgtctgtaaa
gagggtttcagcgggctgttttgcgagaaccctccaccaatgatcttgctgcagaccagc
ccctgtgaccaatcagattgccagaacggtgcccagtgcttggtggttgctggggagccc
atctgtcgctgcatgcctggtttctacggcaacaaatgtgacaagatggccactgttcac
ttcctgggtcgcgatgggtacgtggagctgccaggcacaaagctccgtcccaccgcacat
atttcattacaggtggctacagctaaagacaatggtattctattgtataaagaagatcat
gaccccctggcactggagttgtaccagggacacatacgactcatctacgacatcgccaac
tacccacccaccactgtatatagtgtggagactgtgaatgacgggcttttccacacggtt
gagctgttgattcaaaaccgttccctgagcctggttgtggataatggcgcccccaagagc
ctgggaaagctagcacgccagccctctgttgaccacaacactcagctttacataggaggc
gtaccatcccaggtggtggccttgggtctacgtcctggccctgaacgttcccctcaggcc
ttcaatggctgcatccacaatgtcaaaatcaacggggagccccaggacctgagttacaga
gccacaggaggacgaccacaaggggctgatggcattctttcaggatgtcacacctgcagt
gtgtgtgcacagggtgcgtgcagagagggtggcgagacaggggtaacatgtgactgtcct
ccaggacgtagtgggaccttgtgtgaccagacaacagcaccgactccctgtcagaacagc
agatgtgttcatggtatgtgtgtgccgaagggtcagtcctacagttgccagtgtagtgaa
ggctaccaaggtcaattctgtgaccgacgacaggagcctccagcctgcagggggcagcgc
tgcgggggacacggggagtgtcgcgtgtcagaggcaggagagcctgtctgccattgtcaa
ccagggtacactggaccatcctgtaacccagaggtgacatgtcaaggagagatggtgagg
gagcagctgaagcgccatcaccccatgagaacgtgcacgtccaccagcaaaatcccacgc
atggattgtcctcgatcttgccagacagcagcgccccctggtgtttgctgtggcgtcacc
aagagccgaaagaggaaggtggtcttccgctgcagcgacggcacctcgtactccgaggaa
atggagacggccctagaatgtggctgttccaagtgtccgttgtaa
DBGET
integrated database retrieval system
