Scomber scombrus (Atlantic mackerel): 133985954
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Entry
133985954 CDS
T10651
Symbol
si:dkey-92j12.5
Name
(RefSeq) multiple PDZ domain protein
KO
K06095
multiple PDZ domain protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
133985954 (si:dkey-92j12.5)
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
L27_1
Motif
Other DBs
NCBI-GeneID:
133985954
NCBI-ProteinID:
XP_062281697
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All DBs
Position
2:complement(17361005..17397095)
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AA seq
1915 aa
AA seq
DB search
MEIMDTQCALEAVERLQAKLKERGEAPTQEKLSLLKTVLQSPLFHHILSLQQAQRKPPAK
GKGISKSVSMNCGPCQGMALELKTLSHSDSYTWAMENRRPSTARSFHKSGSITSLGSQEM
SFTDIYPDNCVHTESQYCTPPRIPRSMSMGRNLSAIAHERRHVEMIELINDGKGLGFGII
GGRSTGVMVKTILPGGAAGQDKRLRSGDQILRIGDTDLAGMNSEQVAQVLRNAGSKVKLL
IARDITKDNHLSSPLLNQGSLDDKLNDMDDDFEFSVQFTKNSRGLGFTISSYIGDLNSVY
SAGVIVKSIVKGSTVDQDGRIHLGDIILSVDGVSLQGCSEQRAMEVLRRTGPLVRLRLLR
KSVRLSHILPPAPPLQPLRHSHSFHEGNPYRVGLNKIQETGICSLREISRRAAYANRRPR
HDSRNGVKLTPAEEEDLRRRWQHAVGPRYEVIVCQLQRFSETSGLGISLEARAGHHYLCS
VLPEGPIGQSNKVFNGDQILEVNGIPLIGETHREVVNILKEQPMCVCLVCSRIIPPAIPD
SDEEEDDDARLTLKELLAEFNDKLDQGCVIPCPTAEDITKRGIPPMSPPLAMWERESQVV
ELEKGESGLGFSILDYQDPEDATKTVLVIRSLVPGGVADRDGSLLPGDRLMFVNETDLEG
SSLDYAVHVLKSTGYGPVYIGVAKPLPLELCGGLTPILERSTRASCDDTDSHTQVSLLAE
AAEANTNTCNSEDNSIIQPCYTTTENQLRQRFGIMEADNRQQAPPLPPRTSFERTITVVR
GNRSLGMSVSAIKDGSGMLVRSVVQGGSVSQDGRLGVGDAILAINGEPTFHLSNAKARAM
LRRHSVIGPEMSITYVPASQVDEHRTRLCLPPLASISADRSSPSPTPPTPSPEPALAPAR
SPSPVRTAAPAPALSTLKPFASVKFKATAPDRATVRASTSFRAPFKGPATVPTITPAPDS
SWQIPKSLPQKKMEEGKTDGETVEDKKVKKVKSSADGRVPKKLEVEIKVDGKEEEDDELY
SPTPVSWDQARSVRLTRAPGQSLGISIMGGRGMGQRLSSGEMMRGVFIKHISPDSPAAHN
GTLRTGDRILEVCSMDLRDASHEQAVEAIRRAGDSVVFLVQSGQHRSQSPMLINHDRLTP
TPQSNSHSSKEAETLSGLFLSLSPTNPFTPTPFKAPSPTFDRANWRSPITLTTPITAAAE
DEEDTGRKKMFQRYGSLSGQLQMIELKKDPDAHGLGISLTGNKDGSRARMSVHVADIDHQ
GPAGLDGRIRVGDELLEINGQILYGRSHQNASTIINNAPSKVKIILIRTKAALGQMAVGS
TAECEDMVDTQRDSAERGGLSGDTQHIILPQDGRIKVGDRIIAVGDEPVAGLSLDKVSNL
ILKHRVTVKLSISHSKSLSSSSSLTLPASIPNPCSTSPAPSPTLPVSSFSSSSSPSLTTM
QTCPTGRSDWLEYTSASSDPLSCPVVAGRETSIEICKGNLGLGLSIVGGCDTLLGAVIIH
EVNNGGAAQRDGRLQAGDQILEVNGIDLRQATHDEAIGVLRLTTQRVHLCVFRHQEAYRE
EDLWDVFSLELRPHAREELGLTTVGKSNDTGIFVSDIIKGGVADSDGRLLLGDQILSING
EDVRAASQEHAEKLLQNCSGAVHLEVARFKAGLQYSQRSQEYFKLCFIQSEDSECSTLTP
SSGCDASLSHQRESDDKKEIRSEWHSGVQKLIIQKGPCDSLGISVAGGVGSPHGNVPLFI
ATMDTNGLAAKTQQLQKGDRILSINDVSTEGMTHVHAGALLKTAIGTISLQVAAGSGGCS
TQDHSDVQARSSGQSSSLPCFHNNLRARTYKTITLERGSSGLGFSIVGGFGSPHGDLPIY
IKTVFNKGAAIVDGRLKRGDQIIAVSGHCLEGSTHAEAVDILKKTKGTVVLTVLS
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcatggacactcagtgtgccttggaggctgtggagcggctgcaagccaaactg
aaggagagaggggaggcccccacacaggaaaaactctccctattaaagactgtcctgcag
agccccctgttccatcatatactcagcttacagcaagctcagcggaagcccccagcaaag
gggaagggcatttccaaatctgtgtccatgaactgtggcccatgccagggcatggcgctg
gaactgaagacgctgagtcacagcgactcctacacatgggccatggagaaccgaagaccc
agcacggccagatccttccacaagagtggtagcatcacctctttgggctcacaggagatg
tcctttactgacatctacccagacaactgtgttcacactgaatctcagtactgcactccc
cctcgaataccccgatccatgtcaatggggagaaacttgtctgctattgctcatgagagg
cgtcatgtggagatgatagagttgatcaatgatgggaagggtcttggctttggcatcata
ggagggcgcagcacaggagtcatggtcaagaccatccttccaggaggagctgctggtcag
gataaacgtctgcgtagcggagatcaaatcctgcgcattggagatacagatctggctggc
atgaacagtgagcaggtggcacaggtgctgcgaaatgctggtagcaaggtgaaactgctc
atcgctagggatattaccaaggacaaccacctttcctctcctctcctcaaccagggcagc
ttggatgacaagctcaatgacatggacgacgactttgagttcagtgtgcagttcactaaa
aacagccggggcctgggattcactatttctagctacataggtgacctaaactcagtttac
agcgctggcgtgatagtaaagagcatagtgaaaggcagcactgtcgatcaagatggacgc
atccaccttggagacatcatcctgtctgttgatggggtgagcttgcagggctgtagtgag
caacgtgcaatggaagtgctgaggaggacaggtcccctggtcagactgaggttgttgagg
aaatccgtccgtctgagccacatcttgcccccggcccctcccctgcagcccctccgacac
tcccacagtttccatgagggcaatccctacagagtgggcctcaacaagattcaggagaca
ggaatctgctcactgcgtgaaatctcccggagagcagcatacgccaacagacgaccccga
catgactccagaaacggagtgaaactgacgccagctgaggaggaagacctgaggaggagg
tggcagcatgcagttggaccccgatatgaagttattgtttgtcagctgcagcgtttcagt
gagactagtggtctgggcatcagtctagaggctcgggcaggacatcactacctgtgctct
gtcttacctgaggggcccattggtcaaagcaacaaggtcttcaatggagaccagatactt
gaggtgaatgggatccctctcattggagagacacacagggaggtggtcaatatcctgaag
gagcagccgatgtgtgtatgcctggtgtgctctcgcattataccccctgcaattcccgac
agtgatgaggaagaggacgatgatgcccgtctcaccctgaaagagctgctggctgagttc
aatgacaagttggaccagggctgtgtcataccctgtcctacagctgaggacatcaccaaa
cgtggcatacctcccatgtcacctcctctggccatgtgggagagagagtctcaggtggtg
gagctggagaaaggcgagtcaggactgggcttcagcatcttggactaccaggatccagaa
gatgccactaaaactgttctggtaatccggtctttggtgcctggaggtgtagcagatcga
gatggtagcctgcttcctggagacagactcatgttcgtcaatgaaactgacttggaaggc
tccagcctcgattatgctgtgcatgtactaaagtccaccggctacggccctgtatacatt
ggtgttgccaaaccacttccgctggaattgtgcggtggcttgacgcccatcttggagagg
agcactcgggcttcttgcgatgacactgacagccacactcaggtcagccttctagctgaa
gcagcggaggctaacaccaatacttgcaactctgaggacaacagcatcatccagccgtgt
tacactactacggaaaaccagctgcgtcagcgctttggcatcatggaagccgacaatagg
cagcaagcaccgcctctgcccccccgcaccagctttgagaggacaatcactgttgtccga
ggcaaccgtagccttgggatgtcggtgagtgctatcaaggacggttcaggcatgctggtg
cgcagtgtggtccaagggggctctgttagccaggatggcaggctaggggtgggggacgcc
atcttggccatcaacggagaacctaccttccacctgtccaacgccaaggccagggccatg
ctccgcagacactctgtcatagggccagagatgagtataacctacgtcccagccagtcaa
gtcgatgagcaccgtacccgcctttgtttgccccctctggcatccatctcagcagacaga
tcatctccctccccgacaccaccaaccccttctccagaacctgcgttggctccagccaga
tcccccagtccagtcagaactgcagctccagctccagctctatccaccctcaagcccttt
gcctcagtgaaatttaaagccacagctccagatcgagccacagtcagagcctctacttcg
ttcagagctccgttcaaaggcccagccacagtccccaccatcaccccagccccagactca
agttggcagatcccaaaatctctgcctcaaaagaagatggaagaaggaaaaacagatggc
gagactgtggaggacaaaaaggtcaaaaaggtcaagagtagtgcagatggtagagtacca
aaaaagctggaagtggaaataaaggtggacggtaaagaagaggaagatgacgagctttat
tctcccacccctgtgtcttgggatcaggctagaagcgtgcggctgactcgagcaccaggc
cagtccctgggtatcagcataatgggaggcagaggcatgggccaaagactgagcagtgga
gaaatgatgaggggagtcttcatcaagcatatcagccccgacagtccggcagcacataat
ggcaccctccggactggagacaggatactagaggtgtgcagtatggacctaagagatgcc
agccatgagcaggcagtggaggccatccgcagagcaggagactctgtagtcttcctggtc
cagtccggacaacacagatcacagtctcctatgcttatcaaccatgacagactaactcca
accccacagtccaactcacacagcagcaaggaagcagagactctcagtggtctgttcctt
agtctctcccctacaaaccccttcactcccaccccctttaaggcaccttcgccgacattt
gatagagcgaattggagaagtcccataactctcacaacaccaatcacagcagcagctgaa
gatgaggaagacactggcagaaaaaagatgttccaacgttacggcagcctttctgggcag
ctccaaatgattgagctaaagaaggaccctgacgctcacggcttgggaattagtctcaca
ggcaacaaggatggctcgagggcccgcatgagtgtccacgtggctgatatagaccatcaa
ggacctgctggtttagacgggaggatacgggtgggggatgaactgctggagatcaacggt
cagatcttgtacggccgcagtcaccagaatgcctccaccatcatcaataacgctccctct
aaagtcaagatcattctcatcaggactaaagcagctctgggtcaaatggctgtcggatcc
acagcagagtgtgaggacatggtcgacacccagagagactctgcagagcgtggaggatta
tccggagacacccagcacatcatcctacctcaggatggcaggataaaggttggagacaga
atcatagcagtgggtgatgaacctgtagctggactgtccttagacaaggtgtccaatttg
attctcaaacaccgggtcactgtcaaactgtccatcagccactccaagagtctctcttcc
tcgtcgtctttaactctccctgcatccatccccaatccctgctctacctctcctgctccc
tccccaactctacctgtctcctccttctcctcctcctcctctccatccctcaccaccatg
cagacatgtcccacggggcggtctgattggctagaatacacttcagcatcttctgacccc
ttgagctgcccggttgtggcaggcagggaaacatccatagagatttgtaaaggaaactta
ggactgggcctcagcattgtcggaggatgtgacactctgctgggggcagtaataatccat
gaagtgaacaatggaggagcagcacagagagatggtaggctgcaggctggagaccagata
ttagaggtaaatggtattgacctgcggcaggccactcatgatgaagccattggtgtgctg
cggctcaccacccagcgtgttcacctgtgtgtcttcaggcaccaggaggcctacagagag
gaggacctatgggatgtcttcagcctggagctgaggcctcatgctagagaggagctgggg
ttgaccactgtggggaagagtaatgacacgggaatatttgtgtcagatatcatcaaagga
ggcgtagcagattcagatggcaggttgttgcttggtgaccagattctgtcaatcaatggg
gaggatgtcagagcagcatcgcaggaacatgcagagaagctgctacagaattgcagtgga
gcagtccacctggaggtggctcgttttaaagctggactgcagtactcacagcggagccag
gagtactttaagttgtgttttatccagagcgaagactctgagtgttccaccctgacaccc
tcaagtggatgtgacgcttccctcagccaccagagggagtcagatgacaaaaaagagatc
cgcagtgagtggcactctggtgttcagaagttgatcattcaaaagggtccgtgtgactcc
ctgggcatcagtgttgcaggcggagtgggcagtccccatggcaacgtacctctttttatt
gctaccatggataccaatggactagctgccaaaacacagcaattacagaaaggggacagg
atcctcagtatcaatgatgtgtccacggagggaatgactcatgtccacgcgggagcactg
ctgaagactgccatcggaaccatcagtctgcaggtagcagcaggttctgggggatgtagc
acacaggatcacagtgatgtacaagcccgatcatccggccaatccagcagcttgccctgc
tttcataacaacctgcgtgcacgcacatataagaccatcactctggagagaggctcctcg
ggcctgggcttcagcatcgtaggagggttcggcagtcctcacggagatctgccaatctac
atcaaaactgtcttcaacaagggggctgccatagtggacggtaggctgaagcgaggagat
cagatcattgctgtgagtggacactgtctggagggttccactcacgccgaagctgttgac
atcctcaagaagaccaaaggaactgttgtcctcactgttctctcctga
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