Scomber scombrus (Atlantic mackerel): 133985972
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Entry
133985972 CDS
T10651
Symbol
canx
Name
(RefSeq) calnexin isoform X1
KO
K08054
calnexin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04141
Protein processing in endoplasmic reticulum
ssco04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133985972 (canx)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
133985972 (canx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
ssco03110
]
133985972 (canx)
04131 Membrane trafficking [BR:
ssco04131
]
133985972 (canx)
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ssco04091
]
133985972 (canx)
Chaperones and folding catalysts [BR:
ssco03110
]
Other chaperones and cochaperones
Calnexin / calreticulin
133985972 (canx)
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Clathrin-mediated endocytosis
Others
133985972 (canx)
Autophagy
ER-phagy
Other ER-phagy associated proteins
133985972 (canx)
Lectins [BR:
ssco04091
]
L-type lectins
133985972 (canx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calreticulin
Neur_chan_memb
Piezo_TM1-24
PFF1_TM
RCR
DUF6080
DDHD
SieB
V_ATPase_I
Zip
Motif
Other DBs
NCBI-GeneID:
133985972
NCBI-ProteinID:
XP_062281716
LinkDB
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Position
9:complement(890934..911861)
Genome browser
AA seq
626 aa
AA seq
DB search
MDQRVWLSVLLALGLVCLSLAPVSRADDVMEDALGDDVDVEDELDLDVAGVEDDEEELDL
QDEAADAPKAPAIPKVTYKAPEPMGEHFFAESFDRGTLEGWVVSSAKKEGADEDIAKYDG
KWAVEEMRDSKLPGDKGLVLKSRAKHHAISAQMLRPFTFDTKPLIIQYEVNFQSGIDCGG
AYVKLLTQTPDLDLDHFVDKTGYTIMFGPDKCGEEYKLHFIFRHQNPKTGEYEEKHAKKP
DADLRTYYTDKKTHLYTLVVNPDNTFEVLVDQTVVNSGSLLTDVTPAVNPPAEIEDPDDQ
KPEDWDERAKIQDPAAAKPEDWDEDAPAQIPDEDAVKPDGWLDDEPEYIGDPDAVKPEDW
DEDMDGEWEAPQVPNPACETAPGCGAWKRPMIDNPNHKGKWKAPMIDNPNYQGVWKPRKI
ANPAFFEDLHPFRMSAFSAVGLELWSMTSDIFFDNFFISNDKITADRWATDGWGLKKAAE
GAADPGLATQMLNAAEERPWLWVVYVLTVALPIVLIVVFCCTGKKKSEAATPAAEYKKTD
EPQPDVKEEEEEEEEEEKAEQAEKSSPASAEKSDGEENAPEKEEEEEAEEEEEEEEEGEG
EEKEEEEKLEDDVLRRSPRNRKVRRD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcgggtttggttaagtgttcttctggcgttgggcctcgtctgcctcagcctg
gctcccgtctctcgggccgatgacgtgatggaagacgctctgggagacgacgtggacgta
gaagacgagctggatctggacgtagccggagtcgaagatgatgaagaggagctggacctg
caggacgaagctgcggacgctccgaaggccccggccatacctaaggtcacctacaaagct
ccagaacccatgggggaacatttcttcgctgagagctttgacagggggacacttgaaggg
tgggtggtgtcgagcgccaagaaggaaggtgctgatgaagatatcgccaagtatgatggt
aaatgggcggtggaggagatgagggacagtaagcttcccggtgataaaggtttggttctg
aagtccagagctaaacatcacgccatctctgctcagatgctgcgacctttcaccttcgac
accaaaccgctcatcatccagtatgaggtgaacttccagtcaggcatcgactgcggcggc
gcttacgtcaaactgctgactcagactccagacctcgacctggaccactttgtggataag
accgggtacaccatcatgttcggacctgataaatgtggagaagaatacaagctgcacttc
atcttcagacaccagaaccccaaaactggagaatacgaagagaaacacgccaagaaaccc
gacgctgacctgaggacctactacactgataagaagacacatctgtacactctggtggtg
aaccctgacaacacctttgaggttctggtggaccagacggtggtgaacagcggcagcctg
ctgacggatgtgacccccgctgtgaacccccccgctgagatcgaggaccccgacgaccag
aaaccagaggactgggacgagagggccaagatccaggaccctgctgccgccaagcccgag
gactgggacgaggacgctcccgctcagattcccgatgaagacgcagtgaaaccagacggc
tggttggacgatgagcccgagtacatcggagaccccgacgccgtcaaacctgaggactgg
gacgaggacatggacggcgaatgggaagctcctcaggtgcctaaccccgcctgtgagacc
gcccccggctgcggagcctggaaacgaccaatgattgacaaccccaaccacaagggcaag
tggaaggcaccgatgatcgataaccccaactaccagggcgtctggaagccgaggaagatc
gccaacccggcattcttcgaggacctgcaccccttcaggatgagcgccttcagcgccgtc
gggctcgagctctggtccatgacgtcagacatcttcttcgataacttcttcatctccaac
gacaaaatcacagccgaccgttgggccaccgacgggtggggcctgaagaaggctgcagag
ggagccgctgatcccggtcttgccacccagatgttgaacgcagcagaggagcgtccctgg
ctttgggtcgtttacgttctgactgtcgcgttacccatcgtcctcatcgtcgtcttctgc
tgcaccggaaagaagaagagcgaagcagcgacgccggcggctgaatacaagaagacagac
gagcctcagcctgatgtgaaggaggaggaagaggaggaggaagaggaggagaaggctgag
caagctgagaagagcagtccagcttcagcggagaagagcgacggagaggaaaacgctcca
gagaaagaagaagaagaagaagcagaggaggaagaggaagaggaggaagaaggagaggga
gaagagaaggaggaagaggagaagctggaggacgacgttctgcggagatctccgaggaac
aggaaggtcagaagggactaa
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