Scomber scombrus (Atlantic mackerel): 133986007
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Entry
133986007 CDS
T10651
Symbol
stx5a
Name
(RefSeq) syntaxin-5a isoform X1
KO
K08490
syntaxin 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
133986007 (stx5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133986007 (stx5a)
Membrane trafficking [BR:
ssco04131
]
SNARE
Syntaxin (Qa)
Stx-cisGolgi
133986007 (stx5a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
Syntaxin-5_N
ATG17_like
Apolipoprotein
HrpB7
SEO_N
Syntaxin
DUF16
MCPsignal
Use1
Vac_Fusion
DUF6746
YwqH-like
DUF5063
Prominin
IZUMO
AI-2E_transport
Motif
Other DBs
NCBI-GeneID:
133986007
NCBI-ProteinID:
XP_062281755
LinkDB
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Position
9:14577202..14585304
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AA seq
329 aa
AA seq
DB search
MTCRDRTLEFQSACKSLQGRQNGVQPSKPSHSALRQRSDFTVMAKRIGKDLSNTFAKLEK
LTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDLVRSRGAPGGRHIQTHSNT
IVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSQPPVSASPLMANNFRSRKKGAQ
EPHAGRDPRNDYQGYTTSNLKESSVLMQDESRSLGDVAIDMDSQSNPLQLQLIDEQDSYI
QSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDANVEDTQLNVEGAHTEILKYF
QSVSSNRWLMIKIFLVLIVFFIVFVVFFA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgccgagaccggaccctcgagttccagtcagcctgcaagtctctccagggcaga
cagaatggagtccagcccagtaaaccgtctcacagtgctctcaggcagcgcagtgacttc
acagttatggccaagagaattgggaaagacttgagcaatacgtttgccaaattggaaaaa
ctcactatcttggcaaaaagaaaatctctatttgacgacaaggcagtggagattgaggag
ctgacgtacatcatcaaacaagacatcaacagcctaaacaaacagatagcacagctgcaa
gacttggtgaggtcacgtggagctccgggtggccgacatatccaaacccactctaacact
atagtggtgtctttacagtctaaattggcttcaatgtccaatgacttcaaatcagtcctt
gaagtcagaacagagaacctgaagcagcagcgcagtaggagagagcagttttcccagcct
cccgtctccgcctctcctctgatggccaacaacttcaggagccgcaaaaaaggggcccag
gagccgcatgcaggtcgcgacccgcgcaatgactaccagggctatacaacctcaaattta
aaagagagctcagtgttgatgcaggatgagtccagaagtttgggggatgtggccatcgac
atggactctcagagcaatcctctgcaactgcaacttattgacgagcaggattcgtacatc
cagagtcgcgcagacaccatgcagaacattgagagcaccattgttgaactgggctcaata
ttccagcagctggcacacatggtcaaagagcaagaggagaccatccaaaggattgacgca
aacgtggaagacacacagctgaacgtggagggggctcacactgagatcctcaaatatttc
cagtcagtctcctccaaccgctggctgatgatcaagatctttctcgtcctcattgttttc
ttcatcgtcttcgtcgtcttctttgcctaa
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integrated database retrieval system
