Scomber scombrus (Atlantic mackerel): 133986034
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Entry
133986034 CDS
T10651
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03020
RNA polymerase
ssco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
133986034 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
133986034 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssco03021
]
133986034 (polr2b)
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133986034 (polr2b)
Enzymes [BR:
ssco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
133986034 (polr2b)
Transcription machinery [BR:
ssco03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
133986034 (polr2b)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
133986034 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
133986034
NCBI-ProteinID:
XP_062281788
LinkDB
All DBs
Position
9:complement(53754..101339)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDPQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLLTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAFTGECRSCLENSSRPTSTIWVSMM
ARGGSGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaggacgaagatcctcaatacgatgaagatgaggatgaaatcactcctgat
ctgtggcaggaagcctgctggatcgtcatcagctcctactttgatgagaagggtctggtc
cggcagcagttggactcttttgatgaattcatccagatgtcggttcagaggatcgttgaa
gacgctccgcccatcgacctgcaggctgaagcccagcacacgtctggagaggtggaggag
ccgcctcgctacctgctgaagtttgagcagatttatctttccaagccgactcactgggag
agagacggggctccgtcccccatgatgcccaacgaagcccggctccgaaacctcacgtac
tcggcccccctgtacgtggacatcactaagaccataataaaggagggggaggaccagctg
ctgactcagcaccagaagacgttcatcggtaagatcccgatcatgctgcggtccacttac
tgcctgctgagcggcctgacggaccgagacctgtgtgagctcaacgagtgtccgctggac
ccgggggggtacttcatcatcaacggctccgagaaggtgctgatagctcaggagaagatg
gcgactaacaccgtctacgtgttcgctaagaaggattctaagtacgcgttcaccggtgag
tgtcggtcctgcctggagaactcgtcccggcccaccagcaccatctgggtcagcatgatg
gcccgcggaggctcgggagtgaagaagagcgccatcgggcagaggatcgtgtccacgctg
ccgtacatcagacaggaagttcccatcatcatcgtgttccgagcgctcggcttcgtatcg
gaccgagacattctggagcacatcatctacgacttcgacgaccccgagatgatggagatg
gtgaagccgtccctggacgaagcgtttgtgatccaggagcagaacgtggcgctgaacttt
atcgggtccagaggagcgaagcccggcgtcaccaaagaacgaagaatcaaatacgctaaa
gaggttctgcagaaagagatgctgccgcacgtcggagtcagcgacttctgtgagaccaag
aaggcgtatttcttagggtatatggtccacaggttgcttctcgctgctctgggtcgccgt
gagcttgacgacagggatcactatggcaacaagaggctggaccttgccgggccgctattg
gccttcctgttcagagggatgtttaagaacctgctgaaagagatccggatctacgcccag
aagttcatcgaccgagggaaagacttcaacctggagctcgccatcaagacccggatcatc
tcggatggactcaagtactcgctggccaccggtaactggggcgacgtgaagaaggctcac
caggcccgagccggggtctcccaggtgctgaaccggctcaccttcgcctccacgctgtct
cacctgcgccgactcaactctccgatcggcagagacggaaaactggcaaaaccgcgacag
ctgcacaacactctgtgggggatggtctgccccgccgagacccccgagggccacgctgtg
ggtctggtgaagaacttggccctgatggcttacatctctgtgggctctcagccgtccccc
atcctggagttcctggaggagtggagcatggagaacctggaggagatctcccccgccgcc
atcgcagacgctacaaagatcttcgtgaacggctgctgggtcgggatccacaaagacccc
gaacagctgatgaacactctgaggaagctccgccgccagatggacatcatcgtgtctgag
gtatcgatgatcagagacatcagagagagggagatcaggatctatactgacgctgggaga
atctgccggccgctgctgatcgtagagaaacagaaactgctgctgaagagacgtcacatc
gaccagctgaaggagagagagtacaacaactacagctggcaggacctggtggcgagtggt
gtggtagagtatattgacactctggaggaggagacagtgatgctcgctatgactccagat
gacctgcaggagaaaggtgttgcttactgctccacctacactcactgtgagatccacccg
tctatgatcctgggagtctgcgcttccatcatccccttccccgaccacaaccagtctccc
aggaacacgtatcagtcggctatgggcaaacaggcgatgggcgtctacatcaccaacttc
cacgtacgcatggacacgctggctcacgtgttgtattatccacaaaaacctctggtcacc
acccgctccatggagtacctgcgcttcagagagctgcctgcaggtattaactccatcgtg
gccatcgcctcgtacacgggttacaaccaggaggattctgtgatcatgaaccggtccgct
gtggatcgaggtttcttcaggtctgttttctatcgatcctacaaagagcaagagtccaag
aaaggcttcgatcaggaggagatctttgagaagccgacacgtgaaacctgtcagggtatg
agacacgccatctacgacaagctggacgacgacggcctcatcgcgcctggcgtccgagtc
tccggcgaggacgtgatcatcgggaagacggtgacgctgccggagaacgacgacgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctcaggaccagcgag
accggcatcgtggaccaggtcatggtgacgctgaaccaggagggatacaagttctgcaaa
atcagggtgcggtcggtccggattcctcagatcggggataagttcgccagccgacacgga
cagaagggaacctgcggaatccagtacagacaggaggacatgccgttcacctgcgagggg
atcacacctgacatcatcatcaacccgcacgccatcccgtccagaatgacagtcggccat
ctgatcgagtgtctgcagggcaaggtgtcagcgaacaaaggagagatcggagacgcgacg
ccgtttaacgacgcggttaacgtgcagaaagtatcgaacctgctgtcggagtacggatac
cacctgagaggcaacgaggttctgtataacgggttcacgggtcggaagctgacgtctcag
atcttcatcggaccgacttactaccagcgtctgaagcacatggtggacgataagatccac
tccagagcccgaggcccggtccagatcctcaacaggcagcccatggagggccgctcacgt
gacggaggtctgcgttttggagagatggagcgtgactgtcagatcgctcacggcgccgct
cagttcctgagagaacgtctgtttgaggcttctgacccgtatcaggtccatgtgtgtaac
ctgtgtggtctgatggccatcgccaacacacgcacacacacctacgagtgccgcggctgc
aggaacaagacccagatctcattggtccggatgccgtacgcctgcaagctgctgttccag
gaactgatgtcgatgagcatcgctcctcgtatgatgacatcatag
DBGET
integrated database retrieval system
