KEGG   Scomber scombrus (Atlantic mackerel): 133986038
Entry
133986038         CDS       T10651                                 
Symbol
rnf4
Name
(RefSeq) RING finger protein 4 isoform X1
  KO
K22651  E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27]
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ssco04121]
    133986038 (rnf4)
Enzymes [BR:ssco01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133986038 (rnf4)
Ubiquitin system [BR:ssco04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133986038 (rnf4)
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-RING_4 zf-rbx1 zf_RING_Vps8 RING_XB3-XBAT31 Rtf2 Prok-RING_4 zf-C3HC4_4 zf-UDP zf-RING_11 IBR_1 zf-RING_6 CoV_nucleocap zf-RING_16 zf-ANAPC11 Rad50_zn_hook DZR
Other DBs
NCBI-GeneID: 133986038
NCBI-ProteinID: XP_062281795
LinkDB
Position
9:complement(119832..126428)
AA seq 214 aa
MMLTCSCVSASGLTSDMNASQRKRRTTGSPPGSRSKSRAASRNANASRESDVDQNQNQNQ
DQNQEQEQTETISVLDQSVEDVVDLTCEEAAVVDLTHSDSVLLVEEGPQNRRTATGESYV
VSSDEDEATPPTLNATTLSSIQANSATRLTSGVISCPICMDSYSEIVESGRLVVSSKCGH
VFCSQCLRDALKSSHTCPTCRKKLTSRQYHPLYI
NT seq 645 nt   +upstreamnt  +downstreamnt
atgatgctaacatgttcctgtgtttcagcttccggtctgacgtcagacatgaacgcgtct
cagaggaagaggaggacaacaggaagtcctccaggatccaggtctaagagccgagcagct
agcaggaatgctaatgctagtagagagtctgatgtggaccagaaccagaaccagaaccag
gaccagaaccaggagcaggagcagacagagaccatcagcgtgctggaccagagtgtggag
gacgtggtggatctgacctgtgaggaagctgctgttgttgacctgacgcacagcgactca
gtgctgctggtggaagaaggtcctcagaacaggagaaccgccacaggtgagagttacgtt
gtcagcagtgatgaagatgaagccacgccccctaccctcaacgccaccacgttgtcttct
atacaggccaacagtgctaccaggttgacttcaggagtgattagctgtcccatctgtatg
gactcgtattctgagatagtcgagagcggccgattggtggtttccagtaaatgtggacac
gtgttctgcagccagtgtctgagagacgctctgaagtcatctcacacctgtcctacctgc
aggaagaagctgacctccagacagtaccaccccctctacatctga

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