Scomber scombrus (Atlantic mackerel): 133986068
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Entry
133986068 CDS
T10651
Symbol
vimr2
Name
(RefSeq) vimentin
KO
K05640
glial fibrillary acidic protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133986068 (vimr2)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ssco04812
]
133986068 (vimr2)
Membrane trafficking [BR:
ssco04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
133986068 (vimr2)
Cytoskeleton proteins [BR:
ssco04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
133986068 (vimr2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
PI3K_P85_iSH2
DUF7801
COG3_N
Filament_head
ATG16
HALZ
Fez1
RNase_E_G
Motif
Other DBs
NCBI-GeneID:
133986068
NCBI-ProteinID:
XP_062281829
LinkDB
All DBs
Position
9:12806265..12823611
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AA seq
387 aa
AA seq
DB search
MLRVSSYRKLFEEGSWSPNGSSSMQCAGQYRASVRGAAADECDCDKLDFVAARALSKEGL
DQFVKDRTSIAALNDRLVRLIKLAHCFEEENESLECQIEELEDKLSDRQASSTLTTIVAA
PDFSLDAVVDRLRVERDEILCDTEELQRELQRLKQEYEKVAQQKIFLQQDRQDVAEEVDT
VTAKCLALREQAAIYEEQLANMEAQHKTAVEDLLEPAEETTGVVATLKFGSPDITAALDV
KEYYCQLAESLQFERGVSSSAVVPSGDGEVGVGGAAGVTVKDLTKTEDIIELKMLISELQ
TELSELEKCNEELEDEVEMKKAAYMEEIADLECTIEEMRLQEADFEVQMKEQCEEYKELL
SEKMAREIEITAYRSLVEGEEERLCNL
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgctcagagtgtcttcttaccgcaagctgtttgaggaggggagctggagtccaaatgga
agttccagtatgcagtgtgcaggccagtaccgggcctccgtcaggggtgcggctgctgac
gagtgtgactgtgacaagttggacttcgtagctgccagggcgctcagcaaggagggtctg
gaccagtttgtcaaagatcgcaccagcattgctgctctcaacgaccgactggtcaggctg
attaaactggctcattgtttcgaggaggagaatgagtctcttgagtgtcagattgaggag
ctggaggacaagctgagtgatcgacaagcctcctccaccctcaccaccattgtggctgca
ccggacttcagcctggatgcagtggtggacagactgcgtgtggagagggatgagattctg
tgcgacacagaagagctgcagagagagctgcagcgtctgaagcaagagtatgagaaggtt
gctcagcaaaagatcttcctccagcaggaccgccaagatgtcgcagaggaagtggacact
gtgacagcaaagtgtttggcgctgagggagcaagcggctatctacgaggagcagctggcc
aacatggaggcccagcacaagacggcagtggaggatctgctggagccagctgaagagact
acaggagtggtagcaactcttaaatttggcagccctgacatcactgcggccttggatgta
aaggaatactactgccagctggctgagagcctgcagtttgagcgaggtgtatcctcctct
gctgttgttcccagtggtgatggagaagtgggagtgggaggagctgcgggggtaacagtc
aaagacttgacaaagacagaggacatcattgaactgaagatgctgatttcagagctacaa
acggagctttcagagcttgaaaaatgcaacgaggagttggaggacgaggttgagatgaag
aaggccgcctacatggaggagattgctgacttggagtgtactatagaagaaatgaggctc
caggaggctgacttcgaagtgcagatgaaagagcaatgtgaagagtacaaggagctgctc
agtgagaagatggccagagagatagagatcaccgcctacaggagtctggtggagggagaa
gaggagaggctttgcaacctgtga
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