Scomber scombrus (Atlantic mackerel): 133986178
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Entry
133986178 CDS
T10651
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133986178 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133986178 (rbm22)
Spliceosome [BR:
ssco03041
]
Complex B
Other components
Prp19-related factors
133986178 (rbm22)
Complex C
133986178 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
RRM_3
zf-CCCH_4
RRM_YTH1
zf-CCCH_10
zf-CCCH_12
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
133986178
NCBI-ProteinID:
XP_062281965
LinkDB
All DBs
Position
9:18613090..18620581
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AA seq
427 aa
AA seq
DB search
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDEVPKSDVNKEFYTQN
MEREIANSDGTRPVGQLGKATSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKSISTLYIGGLG
DTVTDGDLKSHFYQFGEIRTITIVQRQQCAFIQFATRQSAEMAAEKSFNKLIINGRRLTV
KWGRSQAARGKEGIKDGVSEMGTRLDPVPGLPGALPPPPALDEEAPANYFNLDPSTSPAV
MNIALPPPPGINPPPPGFGPPMFHPMGPMAPPMPPPMSMRPPGQIHYPSQDPQRMGAHAA
HGSRHGD
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatcactgggctccaacacctacaacagacagaactgggaagacgcggatttc
ccaattctgtgtcagacatgtttaggagaaaacccttacatccgtatgaccaaagagaaa
tatgggaaagaatgcaaaatctgtgctcgaccctttaccgtgttccggtggtgtccagga
acacggatgcgtttcaagaagacagaagtctgtcagacatgcagtaaaatgaagaatgtt
tgtcagacatgtttgcttgacctggagtatggtttgcccatccaggtccgagacactggc
ctttctgttaaagatgaagttcctaagtcagatgtgaacaaggagttctacacacagaac
atggagagagagatagccaattctgatggcacacggccagtgggccagctaggtaaagct
accagctctagtgatatgctgctgaaactggcccggacaacaccatactacaagaggaac
cgtccacacatctgctctttctgggtgaagggagagtgtaagagaggggaggagtgtccc
tacagacacgagaagcccacagatcctgatgacccgcttgctgaccaaaacataaaggac
cgttattatggtatcaacgatccagtagctgacaagctgctgaagcgagcttcgaccatg
ccccgactggacccaccagaggacaagtccatctccaccctctacatagggggtctggga
gatactgttacagatggagatctcaagagtcacttctaccagtttggtgagattcgtacc
attaccatagtccagaggcagcagtgtgccttcatccagtttgccacacggcagtcggct
gaaatggctgctgagaagtccttcaacaagcttatcatcaatggacggaggctcactgtc
aagtggggaaggtctcaggctgctagaggaaaggagggcataaaagatggtgttagtgag
atgggtaccagacttgatcctgtacctgggctgcctggagctctaccaccaccaccagcg
cttgatgaagaggctcctgcaaactacttcaacctggacccaagcacctctcctgctgtc
atgaacatcgctctgcccccacctccaggcatcaacccgcctcctcccggtttcggtcca
ccaatgttccaccccatgggccccatggctccacctatgccccctcccatgagcatgaga
cctccaggtcagatccactacccctcccaggatcctcagcgcatgggtgcccatgctgca
catggctcacgccatggcgattag
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