Scomber scombrus (Atlantic mackerel): 133986467
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Entry
133986467 CDS
T10651
Symbol
sh3tc2
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133986467 (sh3tc2)
Membrane trafficking [BR:
ssco04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
133986467 (sh3tc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_2
SH3_2
TPR_1
SH3_1
SH3_9
TPR_MalT
HEAT_Nup120
TPR_10
SNAP
TPR_7
Motif
Other DBs
NCBI-GeneID:
133986467
NCBI-ProteinID:
XP_062282278
LinkDB
All DBs
Position
9:complement(22495088..22513427)
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AA seq
1613 aa
AA seq
DB search
MALISGSCRLLGQMASCCCRPLLNSSCCGPFIKVCLSSFTDISPAELDALWREPPYTLGG
TNEHFSGNDTMTQGAGEEEDGPVVESGEGGVEPDSYWKRKEAFCRGSTVSLGEKFSSEIA
LLFTGKRRSSVDPDRALQEALRTRLRVVESNSQDVIQLFKDLSARLVSVHAEKDSFVLTF
KTVEEIWKFSTYLALGYVARCLENFLCDQSFWLDQELLSDLEINVTVDEEHLATLYLGLL
LQEGSFFAKALFTRSELDEDDDERLSFKKNDLLMVKDTGQDMWEGTMLSSGQHGQVPVNA
MQPLPYPFYQWFLRKDQGNVGCSPTAKEPFGHPLVTGSCVAVVDYSPVGQDELQLSQGDI
VEIQGLLVRGLGIFIGKHASTGHTGFVHKANVKPLDTIPLDGQLVFLTEEERASLAQINP
CSSEPSDSSLLERLFSSDISSVYRLDRLDDSDFMYIKNQPKHDHKVPTSTRQSVLSERSG
EITPYHSSPRHSLSHSSPRLSLYRSHNPLPREGERLSFTLDDTFRELDEFQEDPPLFLEE
NSWEGDESELSDPTLTLLNCDHFQEDFLPLYDLQYSFLWVTFNGKSEDELSGHLESVREC
AKRMDMHWAHRRACFLLGRLCARKLKLSQARVYYEEALSVHVDSFSDIPLLIALITNLTA
VYLKQRMTDKLPHTLEKASALILCLPSHTFTSMDEVELLKLLLRRSVVMGDKLLEARICY
LISSLFLHLRKTDDALPFVERLQFLSVTLSAAEERPIAPLDLNWLLSLLYHRKYMPYLTL
ASLSLDSRQDHSLHDAFQRIELFIRNSVRLNPCWKEGTSLLPAQIVVYLQHALAIAEKGE
DLKTQRDLCLGLASVYQQHDALDKAVCCAQQAVETGGHINEEEGFEAAVLLGWLLVLTGQ
AERAQGVLQPLLTSLQGTDSPTQRGVIHNLLALCLRRQGCIREAGWHLHSALVISRESGN
QRNQALALANLGCLALDVGASLVAERFLVRSLRLFLELRESPTDEEHVQTYLWLGRSYKD
RGKSQDSRACYEMGLLIALHARNLHSQMVVAKVLSRLYADMLLYGQSIVYYEHCVSVSRE
LKDKRLEGEYLEILSSLYLSLNTEKSSRKSLDYTKQSLRISIDLGKREEESETWLQVGRI
YYLIQEDELADMYLQAAVKTALRMNDPHFAMCIYEEAGDVYFKGHRNRMASLPFYRDGSL
PFARSIKDIHSEFRFLSKLTELLMNQGEHEEALQYATLAVQIASKTGVSVNERTAYHRLA
TVYYNLQQYEMSENYYLKSLSLCTPILQHPREARYYTQLYCRIGNITLHKLKDAFDAVGY
FQMALAAALEDQANPEALYVVYMKLAEIHGNHMPDVQLCQVYRDRAQSLKRVLAGEENMG
NADTESGQNQKNVSDADMEHTESSPERNVNENCEGDSFSRTCMMQADTEHGLRDTILENG
NMKEDHSIHPPDTDSLCVYASSETETITSQSYSDSILTESFATAKEQITDSGSSTDTFQT
YQNQTDQDDFIKGHSDFNTDHDVSGQISVNVTGDISGQTDSQHTDSNIQDEENTPTKESD
VDADLQQKDGSLEKSRSDTDQSETVSINEDKAVNMDNTADKHSQHMDLDDGYL
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atggcattgatctctgggagctgccggctcttgggccagatggcgtcttgttgctgcaga
ccgctgctcaattcctcctgctgtggaccgttcatcaaagtctgcctctcctccttcaca
gacatctctcctgctgagctggatgctctttggagggaaccgccgtacactcttggtgga
acaaatgaacacttctcaggaaatgacaccatgactcaaggcgcaggtgaggaggaggac
ggtccagtggtggagtcaggcgagggaggagtggagccagacagttattggaagaggaaa
gaagccttttgtagaggaagtactgtgtcactgggcgagaaattctcctcagaaattgct
ttgttgttcaccgggaagcggcgctccagtgtggatcctgaccgagcccttcaggaggcc
ctgcgcacccgactccgagtggtggagagcaacagccaggacgtcatccagctctttaaa
gacttgtctgcacgtctggtgtctgtccatgcagagaaggacagctttgtactcacattc
aagactgtggaggaaatctggaagttttcaacttaccttgcattaggctatgtggctcgc
tgcttggagaacttcctgtgtgatcagtccttctggctggaccaggagctgctcagtgac
ttggagatcaatgtaacagtggatgaagaacatctggccaccctctacctgggacttttg
ctacaggagggatccttttttgctaaggcgctattcacgagaagtgagctggatgaggat
gatgatgaacggttgtcattcaaaaagaatgacttgctaatggtgaaggacacagggcag
gacatgtgggagggcaccatgctttcctcaggacagcatggccaggtgccagtcaacgcc
atgcagccgctgccctaccccttctatcagtggttcctgaggaaggaccaaggcaatgtt
ggatgctcgccaacagcaaaggaaccgtttggacatccacttgtgacaggttcatgtgta
gcggtggttgactacagtccagtggggcaagatgagctccagctgagtcaaggtgacatt
gtggagatccagggtctactagtccgaggcctgggcatattcataggaaaacacgcttcc
acgggtcacactggcttcgtacacaaggcaaatgtcaagcctctggacaccataccacta
gatggacaattggtctttctgactgaggaggagagggccagcctggctcagattaaccca
tgtagctctgagccaagtgacagtagcctgctggaaagactcttctcatctgacatcagc
tctgtgtacaggctagatagactggatgactctgacttcatgtacatcaagaatcagcca
aaacatgatcataaggttcctacaagcacccgtcagagtgtcctgtcagagagaagtgga
gagataaccccctaccactcctctcctcgccactctctctctcactcctctccccgcctg
tccctctatcgctcccacaatcctctgccaagggagggagagcgcctgtccttcacgctg
gacgacactttcagggaactggacgagttccaggaagatccgcctcttttcttggaggag
aacagctgggagggagacgagtcggagctcagtgaccccacactgaccctgctcaattgc
gatcacttccaggaggacttcttgcccctgtatgacctgcagtattccttcctctgggtg
accttcaatgggaagagcgaggatgagctatcagggcacctcgagagtgtcagggagtgt
gccaagaggatggacatgcactgggcacatcgacgggcatgctttctactgggaagactc
tgtgccaggaagcttaagctatcccaggcacgagtgtactatgaagaggcattgagtgtt
catgtggacagtttctcagacataccactgctcatcgcgctcatcaccaacctcaccgct
gtctacctgaagcagcgtatgacagacaagctgccccacactctggagaaggccagtgcc
ctgatcctatgtctccccagccacaccttcacctccatggatgaggttgaactgctgaag
ctgctcctgaggagatctgtggtcatgggggacaaactgcttgaggcccgcatttgctac
ctcatctccagcctcttcctccatctcaggaagactgatgatgcccttccgtttgttgag
cgcctccagtttctctcagtgactctctccgccgctgaggaacggcctatagctcctttg
gacctgaactggctcttgagcttgctctatcatcgcaaatacatgccttacttaacactg
gcctcactgagcctggactcaagacaagaccactccctccacgacgccttccagaggatt
gagttgtttatcaggaactcagtccgtctgaacccgtgctggaaggaaggaacctccctg
ctccctgcacagattgtggtttaccttcagcatgccctggccatagctgaaaaaggggag
gacttaaagacccagagggacctgtgcctaggtttggcctcagtctaccagcagcacgat
gctcttgataaggcagtgtgctgtgctcaacaggcagtggaaacaggaggtcacatcaat
gaggaggaaggctttgaggccgctgtgctgcttggctggctgctggtgttgacaggacag
gctgagagggctcagggtgtgctgcagccactgcttacatcacttcagggcacggacagt
cccactcagcgaggagtgatccacaacctcttggctttgtgtctgaggcggcagggttgc
atccgagaagcaggctggcatctccattctgccctggtaatatcaagggaaagcggaaac
cagagaaaccaggccctggcattggccaacctgggctgcctggcgctggatgtgggtgca
tccttggtagcagagcgcttcctggtcagatccctgcgcctttttctggaactccgggaa
agccccacagatgaggagcatgttcagacctatctttggctgggccggagctacaaagac
agggggaagagtcaggacagcagggcgtgttatgaaatggggttattaattgcattacat
gctagaaacttgcacagtcagatggtggtggccaaggtgctgagccggctatacgctgac
atgctgctgtatggtcagagtatcgtctactatgagcactgtgtgtcagtatccagagaa
ctgaaggacaagagactggagggagagtatctggaaatcctcagtagcctttacctctcg
ctcaacactgagaaatcatctcgtaaatctctggactacaccaagcagagcctgaggatt
tctattgatttgggcaagagagaagaagagtctgagacgtggttacaggtgggacgcatc
tattatctcatccaggaggacgagctggctgacatgtacctgcaggcagcagtgaagaca
gccctgcggatgaatgatcctcattttgccatgtgcatctatgaggaggcaggagatgtc
tactttaaaggccacaggaacagaatggcatcactgcctttctacagggatggcagtctg
ccatttgcacgaagcatcaaggacatccattcagagttccgctttttgagtaaattgact
gaactgttgatgaatcagggagagcatgaggaggctctgcagtacgctacactggctgtt
caaattgccagcaaaacaggtgtgagtgtgaatgagaggacagcctaccaccggctagct
acagtctactacaacctgcagcagtacgagatgtcagagaactactacctcaagtccctg
tctctctgtacgcccatcctgcagcacccaagggaggctcgctactacacacaactctac
tgcagaattggaaatatcactctacacaagctcaaggatgcttttgatgcagtgggctac
ttccagatggctctggcggctgccctggaggaccaagctaaccctgaggctctgtatgtg
gtgtacatgaagctggccgagatccatggcaaccacatgcccgatgttcagctctgccaa
gtttacagagacagagcccagagtctgaagagagttctggctggagaggaaaacatgggc
aatgcagacacagagtctggccagaatcagaaaaatgtttctgatgctgatatggaacat
acagaaagttcgcctgagagaaacgtaaatgaaaactgtgaaggtgactcattttcaaga
acttgtatgatgcaggcagacacagagcatggacttagagacactattcttgagaatggc
aacatgaaagaagatcacagtattcatcctcctgatactgacagtctttgtgtgtatgcc
tcatctgagacagaaaccatcaccagtcagtcgtacagtgacagtattctcacagagtcc
ttcgctacggcaaaggagcagatcacagactccggcagctccactgacactttccaaact
tatcagaatcaaacagatcaggacgattttatcaaaggccactcagactttaacactgac
cacgatgtgtcaggtcaaatatctgttaatgtcacaggtgacatcagtggacaaacagat
tcacaacacactgattctaacattcaggatgaagaaaacactcccactaaagaaagtgat
gtagatgcagatcttcagcagaaagatggcagccttgagaagagtcgatccgataccgac
caatcagagactgttagcataaacgaagataaagctgtaaacatggacaatacagctgac
aaacatagtcaacacatggatttagatgatggatacttatag
DBGET
integrated database retrieval system
