Scomber scombrus (Atlantic mackerel): 133986470
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Entry
133986470 CDS
T10651
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03440
Homologous recombination
ssco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133986470 (palb2)
03460 Fanconi anemia pathway
133986470 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133986470 (palb2)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
133986470 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
133986470 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
133986470
NCBI-ProteinID:
XP_062282289
LinkDB
All DBs
Position
2:27944367..27953306
Genome browser
AA seq
1408 aa
AA seq
DB search
MEDTVHCEDQLKTTLHCDDKEKLRRKLALLQREYLRTAQKLQRAERLDTVRKHVRSRIPQ
QKNQDQRDPQVTSNPCPNPSTSSLTLDAHNGAAPGEHQDEENTGGPANSDNSRRSQVIGF
LPPTDVSCPATPDSAHEGARCHRQNPALRLRSRSSRLRWERRSVEAGRSTDNSEERQEQG
EPMESGTEKDEETVKSEGTEVVNESEELFSAADSESPSLLLSHWNTQGHDDTGEMPEGEE
KREKETEVIDEENKNSSLLSMCSSPAVHAEGGRQDFTQNQQKRETKRGEEDSRGQRDDRL
CEENSNKNTEQHAGEKTDSEQTHEGEIKEEKSGMGGDEKGAGLMDSCTIVEGLLFPVEYY
VRTTRRMTSLQSPPDMQAIQLSQFIMGRCRRGRGRGRGRGRGSHRHTHNDEHSDQHTDSS
SLTPAGPHTQPQASDTPAELNQSSSEISDQISLSETNMNALSSPTVCTARPGRGRRRKRG
RGRGRGRPQTPRCSLSLDTNHLSLEQTLDDPQPTSTPLSSSDLSLHGADRPKPCLTPVVT
VPLPAIAQPASTPNTATQPSSEVNGAPSSAASGQQGQVYSIFLKSSNRTNRSTQRNTSAD
SWQSYLLPSSPPTQTSLLPLPSLFSVPLINNQPNFDMHQDFHLPDDQFASLKLHKLRQVA
VESGVEHFSSPSYNTRGSNQRFDSQCSSDPVAPLLLPLSLTPTVEKSTHPNKEKQEKKMK
DNNLTDKLTSPSLAEELFGTTDAPGEQQTDNLNTECQSDTNLPESAVNCVDKHTEKDSVT
LNCQISISNSNTHTPVDPPVKSEISVKFKDKPAGKESDTLQIRHPAPEEQRHCSVVVHRL
EDERPTNHLKEDKAFINSLSFSDRPPQESPEGAPNNCTAAQTCSDTEAPEESPVKLLKPC
VKDLKEPSEPTTNLITDRLEENKNQEKPSPHHSVDSQLLLSPPLASAPCPFVTPHMPLSA
LLSSPTLPSLGLTPRRLSASLPLTSSPSAPSLTLPPPHSPSTQALSPPALSPCASLPPVS
SSAQIHNLPEIPAVDEPLQNGSDIQVRGRGGQVGAKTKETADEDMRRHTLEAPAGGCLVD
ACCLLGSSGSLCVAAAGKWAVCLWSQTSASDWSLTHTWTFNEPVINIFPVPDAAGLMCVT
LGQLEIREMRMLSCSSLSHVLLCEGAIQAVECVPRSRVVSSSYSAAGSTLQVFTLSDSDS
THSCQPLVSPGVCVGAIAPVDGLPDALIGTDEGGCLFVWNLKTGQLLRKIVLGDGLSHTA
CLRGFSSCGVLLVLLQHQFLRSLEEEEKETKAEEQMLLKEEKEEEQSNTALFSLVAVNPM
SGKSVPATRLYPPKAWSGSLCEADVNSSSVVGLSQNGCVCVWELGRRGESRMVWAPESEG
WQLARWGCRDTLLTGHHNGDITLHFSLK
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atggaggacactgtgcactgtgaggatcagctgaagactactctgcactgtgatgacaag
gagaagcttcgtcggaagttggctctgttacaaagggaatatctgaggacagcccagaaa
ctacagcgtgctgagcgtttggatacagtgcggaaacatgtcaggagtaggatcccacaa
cagaaaaaccaggaccagagagacccacaggtgacatctaacccctgtcccaacccgtca
acatcttcactgacactggacgctcataatggggcagctccaggtgaacatcaggacgag
gaaaacactggaggcccagcaaactctgataactccaggaggagccaggtgatcgggttc
ctgcctcccactgatgtctcttgcccagcgaccccagactctgctcatgaaggagcaaga
tgtcacagacaaaatcctgctctgcgcctcaggtccagaagcagccgcctgcgctgggaa
aggaggagtgtcgaggctggcaggagcacggacaacagtgaggaaagacaggagcagggt
gagccaatggagagtggaacagagaaagacgaggagacggtgaagtcagagggaacagag
gttgtgaatgaaagtgaagagctattttctgccgctgattctgagtctccctctctgctg
ctgtcacactggaacacacaaggacatgatgacacgggagagatgccagaaggagaggag
aaaagggaaaaagagactgaggtgatagatgaagagaacaaaaactcttctttgctgtcc
atgtgcagcagccctgctgtacacgctgaaggagggagacaagatttcacacaaaatcaa
caaaaaagggagacaaaaagaggagaagaggatagtagaggacagagagatgacaggctg
tgtgaagagaatagtaataagaatacagaacaacatgcaggagagaaaacggacagtgaa
caaactcatgagggggagataaaggaagaaaaaagtgggatgggaggagatgagaagggt
gcaggcctcatggactcttgtacgatagtggagggactacttttcccagtggagtactat
gtcagaaccacaagacgtatgacatctttacagagcccgcctgacatgcaagccatccag
ctctcccagtttatcatggggcgatgtcgccggggtcggggacggggacggggccgtggc
agaggatcacacagacacacacacaacgatgaacattcagatcaacacacagattcatca
tctctcacacctgcaggtcctcatacgcagccacaggctagtgacacgcctgctgagctc
aatcagagctccagtgagatttcagatcaaatctcgttaagtgagaccaacatgaatgcc
ctttcatccccgactgtctgcacggctcgtccaggtagaggcaggaggaggaagaggggc
aggggtaggggcagagggagacctcagaccccacgatgctcacttagtttagacaccaat
catctcagccttgaacaaaccttagatgatcctcagcccaccagcaccccgctctcctcc
tccgatctctctctccatggagctgatagaccaaaaccctgcctcaccccagtagtaacc
gttccattgccagccatcgcccagcctgcatccacccccaacacagctacacagccctcc
tctgaagttaatggagctccgtccagcgctgcctctggacagcaggggcaggtctattcc
atatttctaaagagcagtaacaggactaacagatccacacaaaggaacacaagtgcagac
agttggcagtcttatcttttaccctcctctccacccacccaaacctctctgcttcctctc
ccctctttattctccgtcccgctgatcaacaatcagccaaacttcgacatgcatcaagat
ttccatctccccgacgaccagtttgcttccctgaaacttcacaaactccgccaagtcgct
gtggaatcaggagttgaacatttctcatcgccgtcttacaacacacgtggcagcaaccag
cgcttcgactcccaatgcagcagcgatccggtggcgcctctactgctcccgctcagcctc
acacccacagttgaaaaatcaacccatcccaataaagagaaacaggaaaaaaagatgaaa
gataacaatctcacagataaactgacaagcccatccttagctgaagagttgtttggtacg
acagacgcccctggagagcagcagactgacaacctcaatacagagtgccagagtgacaca
aacttaccagaatctgctgttaactgtgtagataaacatacagagaaagactctgtgact
ctcaattgtcagattagcatctccaatagcaacacacacacccctgtggatccccctgtc
aaatctgagatctctgtgaagtttaaagataaacctgcaggcaaagagagcgatacactt
caaattagacatcctgcaccagaagaacaaaggcattgttccgttgtggtccatcgtttg
gaggatgagaggcctacaaaccacctaaaagaagataaagctttcatcaacagtctttct
ttctctgatcgccctcctcaggaatcccccgagggcgctccaaacaactgcaccgctgct
cagacatgtagcgacactgaagctccagaagagtctcctgtgaagctgctgaaaccttgt
gtcaaagatttaaaggaaccctctgaacccacaacaaatctgataacagacagattagag
gaaaataaaaatcaggagaagccttcaccgcaccacagtgtcgactctcagctcctactg
agcccccctctggcctcagcaccctgccccttcgtaaccccacacatgcccctatctgct
ctcctctccagccccacactaccatccctaggactcaccccacgccgtctttctgcttcc
ctccccctcacctcctctccatctgccccttctctcacattgcctcctcctcacagcccg
tccacccaggccctctcccctccagctctctctccctgtgcgtccctccctcccgtctcc
tcctctgctcagattcacaacttacctgagattccagctgtggatgaaccgttacagaat
ggcagcgacatccaggtgcggggcagaggcgggcaggtgggggcaaaaacaaaggagact
gctgatgaagacatgaggagacacacattagaggctccagcaggaggatgcctggtggac
gcctgctgcctgctcggatcttcaggcagtttgtgtgtagctgcagcaggaaagtgggcg
gtgtgtttgtggagtcagacttcagcatctgattggagcctaacacacacatggaccttc
aatgagccagtgatcaacatctttcctgtcccggatgctgctgggctgatgtgtgtgact
ttgggtcagttggagatcagagaaatgaggatgctgtcgtgctccagcctctcacatgtg
ctgctgtgtgaaggcgccatccaggctgtcgaatgtgtgcccagatcgagagtggtcagc
tcctcgtactcagcggctggttccacactgcaggtgttcacactgtcagacagcgacagc
acacacagctgtcagcctctcgtgtctcctggtgtttgtgtcggggccatcgctccagtg
gatggacttccagatgctctgatcggcactgacgagggcggatgcctctttgtttggaat
ttaaagaccggacagctgctgcggaaaatcgtcctcggagatggtttatcacacacagcc
tgtctcagaggattttcctcatgtggagtgttactagtcctgctgcagcatcagtttctc
agatcgctggaggaagaggaaaaagaaaccaaagcagaagagcaaatgcttctgaaggag
gagaaggaagaagagcagagtaacactgcactgttctccttggttgctgttaaccctatg
agtggaaaatccgtccctgctactcggctgtatccgcccaaagcctggtccggcagcttg
tgcgaggctgacgttaacagctcgagcgtggtcggcctgagtcagaacggctgtgtgtgt
gtgtgggagctcggccgccgaggggaatcgaggatggtgtgggctccagagagcgaaggc
tggcagctggctcgatggggatgcagggacacgttgttgactggccatcacaacggagac
attacgctgcatttttctctcaagtga
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integrated database retrieval system
