Scomber scombrus (Atlantic mackerel): 133986772
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Entry
133986772 CDS
T10651
Name
(RefSeq) vascular cell adhesion protein 1-like
KO
K06467
CD22 antigen
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
133986772
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133986772
04090 CD molecules [BR:
ssco04090
]
133986772
04091 Lectins [BR:
ssco04091
]
133986772
Cell adhesion molecules [BR:
ssco04515
]
Immunoglobulin superfamily
SIGLEC family
133986772
CD molecules [BR:
ssco04090
]
Proteins
133986772
Lectins [BR:
ssco04091
]
I-type lectins (Siglecs)
133986772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
Ig_2
I-set
ig
V-set
Ig_5
Ig_VEGFR-1-like_5th
Ig_4
Ig_CD22
C2-set_2
Ig_6
VEGFR1-3_N_Ig-like
PKD
V-set_CD47
YomF_C
DP-EP
SIT
Motif
Other DBs
NCBI-GeneID:
133986772
NCBI-ProteinID:
XP_062282324
LinkDB
All DBs
Position
2:complement(31915720..31927783)
Genome browser
AA seq
555 aa
AA seq
DB search
MPSVSVSPSGEIIEGSSVTLTCSSDANPAAKYTWYKKNVNPDLQPLSKEPQLVFSSIQSS
DSGEYYCTAESRMGKRTSENIFLDVKYAPKLPSVSVSPSGEIVEGSSVNLTCSSDANPAA
NYTWYKENEDSPKASGQIFTITDVRPEHSGNYYCEAQNRRGRHNSTLHVIVLKVVQGQNG
WGVTYTSTHICAVKGSTVDINCTYRYPSMINNVDTVVDKTFWFTNLSNTEPVDLKNAGRV
QYHCDKNDCTLRITDLKERDSAEYKFMFITNQPGGKYMGSAGVTLTVTDLQVQVIGAAAC
KDGTCELKYAYKMPFVSLSPSGEIIEGSSVTLTCSSDANPAAKYTWYKKNVNPDLQPLSK
EPQLVFSSIQSSDSGEYYCTAESRMGKRTPANISIDVKYAPKLPSVSVSPSAEIVEGSSV
TLTCSSDANPAANYTWYKENEDSPKASGQTFIITDVRPEHSGNYSCEAQNRRGRNNSTLH
LNVMTGTGITIIAAGGTAAVLLLITILSVFLWMRKKRASHQSSEAEERPDDRERVRRESY
TILPWFHTSTLTILK
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagtgtcagtgagtccttctggtgaaatcattgagggcagttcagtgactttg
acctgtagcagtgatgctaacccagcagctaaatacacctggtacaagaagaatgtaaat
ccagaccttcaacctctcagtaaagaaccacagcttgtcttcagctccatccagtcctct
gactctggagagtattactgtacagctgagagcaggatggggaagaggacatctgaaaac
atctttcttgatgtgaaatatgctccaaagcttccctctgtgtcagtgagtccctctggt
gagatagtggagggcagttcagtgaatctgacctgtagcagtgatgctaacccagcagct
aattacacctggtacaaggagaatgaagactcaccaaaagcatcaggacagatcttcacc
atcactgatgtcagacctgaacacagtgggaattattactgtgaagcccagaacagaaga
ggacgtcataactccaccttacatgtaattgttctgaaagtggtacagggtcagaatggc
tggggagtgacttacacttctactcacatctgtgccgtaaaaggatcaacagtggacata
aactgcacctacagatacccatccatgataaataatgttgatactgtagttgataaaaca
ttctggtttactaatttgagcaatactgaacctgtggatctgaaaaacgcaggtcgtgtg
cagtatcactgtgataagaacgactgcactctgagaatcacagacctgaaagagagagac
tcagctgagtacaagttcatgttcataacaaaccaaccaggagggaaatatatgggttca
gctggagtcactttgactgtcacagatctccaggtgcaggtgatcggagcagcagcctgt
aaagacggcacctgtgagctgaagtatgcttacaagatgccttttgtgtcactgagtccc
tctggtgaaatcattgaggggagttcagtgactctgacctgtagcagtgatgctaaccca
gcagctaaatacacctggtacaagaagaatgtaaatccagaccttcaacctctcagtaaa
gaaccacagcttgtcttcagctccatccagtcctctgactctggagagtattactgtaca
gctgagagcaggatggggaaaaggacacctgcaaacatctctattgatgtgaaatatgct
ccaaagcttccctctgtgtcagtgagtccctctgctgagatagtggagggcagttcagtg
acgctgacctgtagcagtgatgctaacccagcagctaattacacctggtacaaggagaat
gaagactcaccaaaagcatcaggacagaccttcatcatcactgatgtcagacctgaacac
agtgggaattattcctgtgaagcccagaacagaagaggacgtaataactccaccttacat
ctgaatgttatgacaggaacaggaataacaatcatcgctgctggaggaacagctgctgtt
ctcctgcttatcacaatcctctctgtcttcctatggatgaggaaaaagagagcctcccat
caatcgtctgaggctgaggagagaccagacgacagagagagggtgaggagggagagttat
actattctaccctggtttcacacttccacactcactatcttaaagtga
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