Scomber scombrus (Atlantic mackerel): 133987306
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Entry
133987306 CDS
T10651
Symbol
si:dkey-72l14.3
Name
(RefSeq) glyco_hydro_56 domain-containing protein
KO
K01197
hyaluronoglucosaminidase [EC:
3.2.1.35
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco00531
Glycosaminoglycan degradation
ssco01100
Metabolic pathways
ssco04142
Lysosome
Module
ssco_M00076
Dermatan sulfate degradation
ssco_M00077
Chondroitin sulfate degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
133987306 (si:dkey-72l14.3)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
133987306 (si:dkey-72l14.3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
ssco02042
]
133987306 (si:dkey-72l14.3)
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133987306 (si:dkey-72l14.3)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ssco00537
]
133987306 (si:dkey-72l14.3)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.35 hyaluronoglucosaminidase
133987306 (si:dkey-72l14.3)
Bacterial toxins [BR:
ssco02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
133987306 (si:dkey-72l14.3)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Enzymes
133987306 (si:dkey-72l14.3)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ssco00537
]
Enzymes
133987306 (si:dkey-72l14.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_56
MycE_N
Motif
Other DBs
NCBI-GeneID:
133987306
NCBI-ProteinID:
XP_062282608
LinkDB
All DBs
Position
10:complement(10007721..10014170)
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AA seq
571 aa
AA seq
DB search
MAWTEPRPHPHPKPEPKLTLYNLRTHTSATTFSSASIKAHPPVLLPFLFLLFAAFADLGT
AGPPQKARPPLLYGQPFIIFWGIPDSSCSGRPDPGSFGMEREGRVVVFYEDTLGNYPYFV
DRDTPVNGGLPQHTRLESHLQKTQQDLETALPAPRYLGLGVVRWSEWVPQWSRNREKQAM
YPEASRNLMKAFFPTWTPEEVEKWSKVDFEAAAQSVMMETLREVKRSRPKALWGVSPYPS
CYTGDPAQTMLANYTGQCPAAEMALNDELLWLWKRCSALYPLLTLEKLQGGTSGARLYLS
SQIKEAQRVSSLAGTAFDLPVFPIVKSIYASTNTFLSQADLVSTIGESAAMGTAGVVIWQ
RRETKTERECQDLAEFVRKVLGPYSINVTTATRLCSASLCQGKGRCVRQNPDSSAYLHLP
PPSEVLEKVTEKAEAAKATDQPDTDAKPAEPDPAEIWKKDFQCQWYKTADRDVSDQQSPK
DGASVGGTVEENAGDVVGTTTASTTIASSTKGASVTELRESGSPVTGSPVTGTGSPTPSL
AGPTDCGTSLLTSSNLTVLLLLVALSLCLEP
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggaccgagccacgtccgcatccacacccaaagccagaacctaaactgacactt
tacaatctcaggactcacacatcagccacaactttctcatcagccagtattaaagcccat
cctccagttttactacccttcctcttccttttatttgctgcctttgctgaccttggtaca
gctggtccaccccagaaagctcgcccccctctcctgtatggacagccttttatcatcttc
tggggcatccctgactcttcctgctctggtcggcctgaccctggatcttttgggatggaa
cgggagggccgtgtggtggtcttttacgaggacacattggggaactacccgtattttgta
gaccgagacacaccggtcaatgggggactaccacagcacacacggctggagagccacctt
cagaagactcagcaggacttggagacagctttacctgccccaagataccttgggctaggg
gttgtacgctggtcagagtgggtcccccaatggtcgagaaaccgagagaagcaggcaatg
tatcctgaggcatcgaggaacctgatgaaagctttctttcctacctggaccccggaagag
gtggagaagtggtcaaaggtggactttgaggcagcagcccagtcagtaatgatggagact
ctacgggaggtcaaaaggtcaaggccaaaagcattatggggagtctccccttaccccagc
tgctacactggcgaccctgcccaaaccatgttagccaattacaccggccagtgccctgct
gcagagatggcccttaacgatgagctcctgtggctatggaaacgatgctctgccctctac
cctctcctcaccctggagaagctgcagggtggaacctctggagccaggctttatttgtcc
agtcaaatcaaagaagcacaacgagtatcatccctggctggaacagcgtttgatcttcct
gtattcccaattgtcaaaagcatctacgcctcaactaatacgttcctatcacaggcagac
ctggtcagcaccataggagagagtgctgccatgggaacagccggagtagtcatctggcag
agaagagagactaagacagagcgggagtgtcaggacctggcagagtttgtccgtaaagtt
ctaggaccttactccatcaacgtaaccacggcaactcgactgtgctcagcctccctgtgc
cagggaaaaggccgatgtgtccgtcaaaatccagacagctctgcctacctccacctcccg
cccccctccgaagtgctggagaaggtgacagaaaaggcagaggcagcaaaggccacagac
cagccggacacagatgccaaaccagctgaacctgacccagctgagatctggaagaaagac
ttccagtgccagtggtacaagactgcagacagggacgtctcagaccagcagtcccccaaa
gatggggcttctgttgggggaacagtagaagaaaatgctggagatgtagtggggactaca
acagcctctactacgatagcttcatcgacaaaaggtgcctctgtgactgagttaagggaa
agcggttcacctgttactggttcacctgttactggtactggaagtccaacgccttcactg
gcaggacctacagactgcggtacgagtctgctgacttcctcaaacctaactgtcctgctg
ctgctggtggctctaagtctctgcctggaaccttaa
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