Scomber scombrus (Atlantic mackerel): 133987329
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Entry
133987329 CDS
T10651
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Ribosome biogenesis [BR:
ssco03009
]
Eukaryotic type
90S particles
Other 90S particles
133987329 (pdcd11)
BRITE hierarchy
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133987329
NCBI-ProteinID:
XP_062282635
LinkDB
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Position
2:complement(9556800..9569730)
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AA seq
1816 aa
AA seq
DB search
MASVEEDFPRGGTTNKKATESKIVTLRTEVDNLFQPSEQPEAKKRKGASKDDSKKFKKPK
TGKEKGDGLTLNTAVKCVEILHAKNVKEGMLMLGCVKEVADFEVTVSLPCGLHGFLSIKN
ICDSYTKLLSQQLDSVDTEEIYSLPHFFYPGMVFRCVVAKLDEAKGGSISIQLSVNPKLV
NKALTSSSLKAGMVLTGCVESVEDHGYITDIGVSGTKAFLPKKAVTDKQSKPEELKVGQY
VTCQLEDVKNDGRIVRLSFCPPTIAQPCAEPQQGWNLTNLLPGLQVKATIKKVTKHGLLL
DFLSSFSGQVDFLHMDPEQASSYTEGGEVRACLLYVEPSTRLVGLSLRSYLVQPGSRVEP
SPACGDRIGEVVNSCKVTSMHHMSGAMLELPDKTPAFVHRNHLKESNEPGNDNKVLAIPE
HTCRILDFSPIDQLHFVSLRKSVISKPFFRYHDLQAGQIVEGKVAVLLTHGMVVHLSGHI
KGLVPRTHLSDIVLKNPEKKYMEGMKVKCRVLSVDPENKKLYLTRKKALIESPLPLFLSY
DDARPGRVSHGYIVCVKHFGCIVRFYNSVKGLVPLSELSSEPITNPEDVFYVGQVLKAKV
LHCDTEKAKMVLTFRDAVAKETEEIRKPQIDCEVGKKLEAKVLKKVLNGLEVAILPEEFR
ATLPTMHLSDHMSNCTMLWESMQEGDTISDLVCFNKNKTGITLTKKPTVRWSLEEGVVAK
EFSEITVGMQLIGWIKNIMSYGVFVEFPYGLVGLAPKSAMTDKFLSDTTTAFQMGQTVIA
KVTNLDEEKKRFLVTLKMSEVISPGGDAQTRLIRGLQERRAVTEMLATRDNSELHQQLAA
LSIGQKLKLTVDTVKESGAIFKSDDLVGASIMATKHHVMGVSLTSGQKVTAVVLLVDILS
TSVHVSILSKLVAKKKSLNEESKYRAILQHIDKDFATISLDDTAQLTVIQTRSHLNETFL
SESEKLRAGMCLAVEVIEPSCEELQGLPLVSWQRTAPKRQRTVSENQSSSKGHRFGDILQ
AKVRTVKPTCIQVTLEDGSIGSVHVSEVVEAEEVRQGSFPTSSVKVGSVVTARVIGGREA
TSHRFLPFSHPKFTYTIPELTLIPSKLDQSADFKVVTAKEKLSSYKVGEEMTCFVSKFNP
ERKCLEVTTDPCVTATVELLAMITDPKDASHPEKLYKLGQAVHAKVVEVTSKPQRLALSV
TGSHKLEKDSVTLGMVTSIQPQVGLLVKLPFGGTGTVAVTDLADAYRPNPLEVYSKDQLL
RFYLLGNENGKWQLSLRPSRLNPQAKPAKDAEVSSVQELKTGQIIRGYVKSVGERGVFIK
LSTSITGRAELQQSSKYFVNNHKVLSEHLLPNTLLTTKILSIDKKEELVNLSLLPADTGK
PDVLPESLGLPLRLIGEEKKKHDATKKKKRTLSESEEKQEESQVPKKKKKKKTVTEDNDS
GVEVYFREEEDKEDEEEPKPNPAKQVTPSSAGPSRLQVAAGFSWDMGLNSLKPASADKDP
DSSDGEDQEGGSKAQKKSRHELEQEKKAAEKALLQRETELMDPNLRPQDTVAFERLLLAS
PNSSLLWLQYMAHHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEE
SLKKVFERALQFCEPMPVYQQLADIYAKSDKTKEAEGLYKTMVKRFRQNKAVWLSYGTFL
LQQGESDAASAVLQRALKSLPSKESVDVIAKFAQLEFRYGNAEKGRTMFDKVLTSYPKRT
DLWSVFIDLMVKHGAQKDVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGSPQSIQAVK
EKAMEFVEAKGTEAAN
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagtggaggaggacttccctcgaggagggacaaccaacaagaaggccactgag
agtaaaatagtgactctacggactgaagtggacaacctgttccagccaagcgaacaacct
gaagctaagaaaaggaagggagcgtccaaagatgacagcaagaaattcaagaagccaaag
actggtaaagagaaaggagatggtctgaccctcaacactgcagtcaagtgtgtggaaatt
ctacacgctaagaatgtgaaggagggcatgctgatgctgggctgtgtgaaggaggtagca
gactttgaggtgacagtcagtctgccttgtggcctgcacggcttcctcagcatcaagaac
atctgtgactcgtacaccaagctgctcagccaacagctggattcggtcgacacagaggag
atttactctctgccacacttcttctaccctggcatggtgttcaggtgtgtggttgccaag
ttggatgaagcaaagggaggctctattagcatccagctatcagtcaacccaaagctggtc
aacaaggctctcacttcaagctctctgaaagctggcatggtcttgactggatgtgttgag
agcgtagaggatcatggctacatcactgacattggcgtaagcggaactaaagccttcctg
cccaagaaagcagtaacagataaacaaagcaaacctgaagaactgaaagtgggccagtat
gtgacttgtcagttagaagacgtgaagaacgatggacgcattgtccgactttctttctgt
cccccgaccatcgcccagccctgtgctgaaccccagcagggctggaacctcactaacctc
ctgcctggtcttcaagtcaaagctacaatcaaaaaggtgaccaaacacggtctgctccta
gacttcctgtcctcgtttagtggccaggtggatttcctccacatggatccagaacaggca
tccagctacactgagggaggcgaggtgcgagcctgcttgttgtatgtggagccatccacc
cgtctggtgggtctgagcctgcgcagttacctcgttcagcccgggagcagagtcgaaccc
tcccctgcttgcggtgaccgtatcggcgaggtggtgaatagctgcaaggtgacctctatg
catcacatgtctggagccatgttggaactgcctgacaaaacaccagccttcgttcacagg
aaccacctgaaggagtctaacgagccaggtaatgacaacaaagtgctggccatacctgag
cacacctgcaggatcttggacttcagccccatcgaccaacttcattttgttagtctgcgc
aagagcgtgataagcaagccgttctttagataccacgatcttcaggctggtcagattgta
gagggtaaagtggcagtcctgctgactcacgggatggtggtgcatttgtccggccacatt
aaaggcctggtgccgcggacccacctgtccgacatcgtcctaaagaacccagagaagaag
tacatggagggcatgaaggtcaaatgtcgggtgctgtctgtagatcctgagaataagaag
ctgtatctgaccagaaagaaagccctgatcgaaagccccctgccgttgttcctcagctac
gacgacgcccgtcccggccgcgtttcccacggctacatcgtctgcgtcaaacactttggc
tgcatcgtccgtttctacaacagcgtcaagggcctggtgccgctcagcgagctcagctct
gagccaatcaccaatcctgaggatgtcttctacgtcggtcaggtgttaaaggcaaaggtt
cttcattgcgacacagagaaggcaaagatggtgctgacgtttagggatgcagtggcaaaa
gaaactgaggaaattcgcaagccccagattgactgtgaagtgggaaagaagctggaggcc
aaagtgctgaaaaaggtacttaacggtctggaggtggccatccttcccgaagagttccgt
gcaacactacctaccatgcacctctcggatcacatgtctaactgcactatgctgtgggag
agcatgcaggagggagacaccatctctgatctagtctgcttcaacaagaacaaaacgggc
attactctcaccaagaaaccaacagtgagatggtcgctggaggaaggagtggttgccaag
gagttctcagagatcaccgttggaatgcagctgatcggctggatcaagaacatcatgtcc
tatggcgtctttgtagagttcccatacggccttgttggtctcgcacccaagtcggccatg
acggacaagttcctcagtgacacaacaaccgccttccaaatgggccagacagtcatcgct
aaggtgaccaacctggatgaggaaaagaagagattccttgtcacactgaaaatgtctgag
gtcataagtccagggggggacgcccagaccagactcattagaggcctgcaggagagaaga
gctgtgactgaaatgctggctacgagagataacagcgagctccaccagcagctggctgct
ctgtctatcggccagaagctgaagctgactgtggacactgtgaaggagagtggtgctatt
tttaagtccgatgacttggttggtgccagcataatggccaccaagcaccatgtcatgggt
gttagcttgacctcaggacagaaagtgactgcagttgtccttcttgttgacatcctgtcc
acttctgtccacgtgtccatcctttccaaactggtggcgaaaaagaaatctttaaatgaa
gagtcaaagtacagagctatactgcagcacatcgacaaagactttgccaccatctcactg
gatgacacggctcagctgaccgtgatccagactaggagccacctgaacgagacattcctg
tccgagtcggagaagctgagggcggggatgtgtttggccgtggaggtcatagaacccagc
tgcgaggaactgcaggggctccccctcgtgtcctggcagcgcaccgcaccaaaacgacag
cgcacagtctcagaaaaccagagcagctccaagggtcaccgctttggcgacatcctgcag
gctaaagtgcggacagtgaagcctacctgcattcaggtcacgctagaagacggaagcatc
ggcagcgtgcatgtgtctgaggtggtggaggctgaggaggtgcgtcagggatccttcccc
acatcctcggttaaggtgggcagcgtggtcacggccagggtcatcggagggcgagaggcc
accagtcacagattcttgcccttctcccatcccaagtttacatacaccattcctgagctc
acacttatacccagcaaactggaccagagtgccgatttcaaagtggttacagcaaaagaa
aagctgagcagctataaggttggcgaggaaatgacatgctttgtatcaaagtttaatcca
gagaggaagtgtttggaggtcaccactgatccttgtgttactgcaacagttgaacttctg
gccatgatcactgaccctaaagatgccagccacccagagaaactgtacaagcttggccaa
gctgtccacgccaaagtggtggaagtgacctccaaacctcagcgccttgcactgtcagtc
acaggttcccataaactggagaaagacagtgtgactttggggatggtgacaagcatacag
ccacaggtcggcctcctggtcaagcttccctttggtggcacggggactgttgctgtcact
gacctggctgatgcttacaggccaaacccgttggaggtgtacagcaaggatcagctcctc
aggttttaccttctgggaaatgaaaatggcaagtggcagttgtccctacgtccatcaagg
ctgaacccgcaggccaagccagcgaaagacgcagaagtttcatctgtacaagaactgaag
acgggccagatcatcagaggctacgtcaagtctgtaggagagcgaggagtgttcatcaag
ttgtcgacgagcatcacaggaagagccgagcttcagcagtcctcaaagtattttgttaac
aaccacaaggtcctttctgagcacctgcttccaaacaccctgctcaccacaaagatcctc
agtatcgacaaaaaggaggagttagtcaacctctcccttctccccgcggacaccgggaag
ccagacgtcctcccagagtctctgggtctgccgctgcgtctgatcggagaggagaagaag
aaacacgacgctacaaagaaaaagaagcgcactctgtctgagagtgaggagaaacaagaa
gaatcccaggtcccgaaaaagaagaagaagaagaaaacagtgaccgaggacaatgacagt
ggagtggaggtgtactttagggaagaggaggataaagaggatgaagaagagcccaaaccc
aatcctgcaaaacaggtgacgcccagctcagcaggtccatccagactgcaggtggcagca
ggtttctcctgggacatgggactgaactccctgaagcctgcctctgcagataaggatcca
gactccagcgacggagaggaccaagagggaggcagcaaggcccagaaaaagtctcggcac
gagctggagcaggagaaaaaggcagcggagaaggccctgttgcagcgggagaccgagctg
atggaccccaacctgaggccccaggacactgttgccttcgagcgtctgctcctcgcctcg
cccaacagctcgctcctttggctccagtacatggctcaccatctgcaggccacccagatc
gagcaggcccgcgctgtggccgagagggcgcttaaaacaatttccttcagagaggagcag
gagaagctgaatgtgtgggtggccctgctcaacctggagaacatgtatggcacagaggag
agtctcaagaaagtgtttgagcgggcgctgcagttctgtgagcccatgcccgtctaccag
cagctggctgacatctacgcaaagtctgacaagaccaaggaggcagagggcctgtataag
acgatggtgaagcgtttccgtcagaataaggcggtgtggctgagctatggcaccttcctg
ctccagcagggtgagagcgacgctgctagtgctgtcctgcagagggcgctgaagagtctg
ccctccaaagaaagtgtggatgtgattgcaaagttcgcacagttggagttccgttacggc
aatgcagagaaaggtcgcaccatgtttgacaaagtcctgacaagctacccgaaacgcaca
gacctctggtccgtcttcattgacctcatggtcaaacatggagcacagaaggacgtcagg
gcgctctttgatcgtgtgatccacctcagtgtttctgtgaagaagatcaagttcttcttc
aagcgctacctggagtacgagaagaagcatggctccccacagagcatccaggcagtcaaa
gagaaggccatggagtttgtggaagccaaaggcaccgaggctgccaattaa
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