KEGG   Scomber scombrus (Atlantic mackerel): 133987346
Entry
133987346         CDS       T10651                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    133987346 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ssco03021]
    133987346 (taf5)
   03036 Chromosome and associated proteins [BR:ssco03036]
    133987346 (taf5)
Transcription machinery [BR:ssco03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     133987346 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     133987346 (taf5)
Chromosome and associated proteins [BR:ssco03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     133987346 (taf5)
    STAGA complex
     133987346 (taf5)
    TFTC complex
     133987346 (taf5)
    SAGA complex
     133987346 (taf5)
    SLIK complex
     133987346 (taf5)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd TFIID_NTD2 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_TEP1_C Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR19_1st Tricorn_2nd Beta-prop_DCAF12 WD_LRWD1 Beta-prop_Nup120_160 PEP5_VPS11_N LisH_PAC1 PROPPIN VPS8_N LisH_TPL Beta-prop_ACSF4 Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 133987346
NCBI-ProteinID: XP_062282659
LinkDB
Position
2:complement(9571679..9576719)
AA seq 750 aa
MAAVQGGLVDTDEEKDIKTEPSNDGFGNNNVNDGRLLSTSPGATASAAATKPAVGASEDQ
QTLLAVLQFLRKNKLTESVDILRREAGLPEDSLDLKGADSFGAGSGGAAGGGDADGGDAN
SLLSRVTISSTAVVQAPPKAVSGEDQPDVNVVLSAYSQQGDPLLYKVYYSGLKKFIETVL
DCHRAELSQVFYPLFVHMYLELVYNNHENEAKFFFEKFSGDQECYYKDDLNILSSLTKKE
HMRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSK
SQIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEEGKPKKKKPKKDS
MGSKSKKQDPNAPSQTRIPLPELKDSDKLDKIMYMKESTKKIRLGPECLPSICFYTFLNA
YQGLTAVDFTDDSSLVAGGFADSTVRVWSVTPKKLRKVKSSADLNLIDKESDDVLERIMD
EKTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVW
DTQFSPHGYYFISGGHDRIARLWATDHYQPLRMFAGHLADITCTRFHPNSNYVATGSSDR
TIRLWDVLTGNCVRIFTGHKGPIHALAFSPNGKFLASGATDGRVLLWDIGHGLMFAELKG
HTDTVYSLRFSRDGEILASGSMDNTVRLWDATKAFDDLETDDFTAATGHVHLQENSQELL
LGTYISKSTPVVHLHFTRRNLLLAAGAYNP
NT seq 2253 nt   +upstreamnt  +downstreamnt
atggcggccgtgcagggtggtctggtcgacacagatgaagaaaaagacataaaaacagaa
ccatcaaacgatggctttggaaacaacaatgtaaacgacggacgactgctctctacgtcc
cccggggctactgcttcggctgcagctaccaaacctgcggtgggagcctcggaggaccag
cagacgctactcgcagtcttgcaattcctgagaaagaacaaactgactgagtctgtcgat
atattgcgtcgtgaagctggattaccggaggattcattggatctgaagggggctgattcc
ttcggggcaggctctggaggtgcagcgggaggtggggacgcagatggcggggatgcaaac
tctcttctcagccgggtgaccatctcatccaccgccgtagttcaggcgccacccaaagca
gtgtctggagaggaccagccagacgtcaatgtggttctttcggcttacagccagcaggga
gacccacttctttacaaggtttactacagtggcttgaaaaagttcatagaaactgttttg
gactgtcaccgagcagaactgtcccaggttttctacccgctgtttgtccacatgtatctg
gagctggtgtacaacaaccacgaaaatgaggccaagtttttttttgaaaagttcagtggg
gatcaggagtgctattataaagacgacctcaacattttgtccagcctaacaaagaaggag
cacatgagaggcaatgagacgctgttggattttcgcaccagcaagtttgtcctgcgcatc
tcccgtgactcttaccagctgcttaagaggcacctgcaggagcgtcagaacaaccagatc
tggaatatcatccaggagcacctctacatcgacatcttcgatggcatgccacgcagcaag
agccagatcgatgccatgtctggcagcttggctggagagggcaagagagaggccaataaa
gctaaggtctactatggattgcttaaggaaccagaaattgaactgcctcttgacgatgag
gatgaagaggcagagaacgaggagggtaaacccaagaagaagaaacccaaaaaggacagt
atgggctccaagagcaagaagcaggatcctaatgcaccttcacagactaggatccctctt
ccagaactgaaagattcagacaagctggacaagatcatgtacatgaaagagtccaccaag
aagatccgcctgggaccagagtgtctcccctccatctgcttctacactttcctcaatgca
taccagggtctgactgcagtcgacttcacagacgactccagtctggtagcaggaggcttc
gctgactccacggtgcgagtatggagcgtcacacctaaaaagctccgcaaagtcaaatct
tcagcagacttgaatctgattgacaaagagtcagatgatgtgctggagaggatcatggat
gaaaagacagccagcgagtctaagatcctatatggacacagtggcccagtatatggtatc
agcttcagcccagacagaaactacctgttgtcaagttctgaagacggtacagtcaggctg
tggagtctccaaacatttacatgtctggtgggatacaaaggccacaactaccctgtatgg
gacacccagttctcgcctcatgggtactattttatttctggaggacatgaccgaatcgcc
cgtctgtgggcaactgatcactaccagcctctacggatgtttgccggtcacctagctgac
atcacttgcacccgcttccaccccaactccaattatgtggccactgggtcatctgaccgc
accatccgcctctgggacgtcctgactggaaactgcgtgcgcatcttcactggtcacaag
ggtcctatccacgcactggccttctctcccaatgggaagttcttggcttcaggagcaact
gatggcagagttctgctgtgggacatcggtcatggactcatgtttgcagagctcaaaggt
cacacagataccgtctactccctcaggttcagcagggacggcgagatcctcgcctcaggc
tctatggacaacactgttcgcctgtgggacgccacgaaagcatttgatgatttagagacc
gacgacttcacagcagctacaggacatgtccatctacaagagaactcacaggagcttttg
cttggcacctacataagtaaatccacgccggtcgtacaccttcacttcaccaggaggaac
ctgctgttagccgctggggcctacaatccataa

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