Scomber scombrus (Atlantic mackerel): 133987369
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Entry
133987369 CDS
T10651
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133987369 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133987369 (pan2)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133987369 (pan2)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133987369 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
133987369 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
133987369
NCBI-ProteinID:
XP_062282689
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All DBs
Position
10:complement(25303731..25317412)
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AA seq
1212 aa
AA seq
DB search
MMNFDGLDAGMGEYSPSLHGTLDAGMEPSMDPHLNPNLLQGVELDPEGLAVTGPEPVHLM
EGMFSELHSAVSEVGIPVTATHFDLQEEILWMGNHRGHATSFFGPTMGRHSSFQAHATDD
IRQIQSLETGVLFLSKSNLKCHTRGGLVMFDYPMDEGADMHSLLMTDNNMMLMGGLQNYV
VEFDLNTVQETQRFTVDMPGIAIMRQTGRFFFCGHTSGKITLRDLRSFKTEHEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNGLACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGQCQFCEPTGLANLADVFHVNTVGQLLMSFDVSSSKQALAFGDSGGCVHLW
SDAPEVSFNDYSRETEFALPCLVDTLPQLDWNHDLLPISLIPMPLTSTEPLLSDWPTNVA
TPSPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKIKDVELDYDNYNQVPESPI
GRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLY
FLEPIRCLVRNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGLI
LADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSGESAIGKL
FGCEVENSSLCRCGKETVRTSLTLLFTMHYPEQNSQEKTVKEYDFAEILKKSICLEQSTQ
AWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKVQAEYAFNKAKQKEAMEPA
KPKEPPPPMPTEWCLDGEEMVNMEGFTFDTRAEDLRHVWIPVTLKMSISKTQGLEVCSWP
EGEELSTAEEEEGASLYDLVVTVPHVLDARTGGNLVAHIKVGETYHQRKEGVTHQQWYLF
NDFLIEPIDKAEAAQFDVSWKVPAILYYAKRNYHTKYDLRMKNPIDASVLLTEASLARKQ
RKSHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCV
RGQGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLI
DTGVRFVGHGLQKDFRVINLLVLKDQVVDTVHLFHLPRKRMISLRFLAWYFLDLNIQGET
HDSIEDARTALQLYRKYLELSRGGGSDEVRKVLKGLYEKGRQKDWKVPESDPGDGQGSPK
SAPAVYPSVLGL
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgacggtctcgacgcggggatgggtgaatactcgcccagcctgcacggg
accctggacgcagggatggagccctccatggacccccacctgaaccccaacttactgcag
ggtgtggagctggaccccgaggggctggctgtcacgggccccgagcccgtgcacctcatg
gaggggatgttctctgagctgcacagtgcggtctcagaagtcggcattccagtcactgca
acacatttcgatctgcaggaggaaattctctggatgggaaatcacagaggtcacgcaacc
tcgttcttcggacctacaatgggccgccactcttctttccaagcgcatgcaactgatgac
atccgacagattcaaagtttggaaacaggcgtgctcttcctctccaagagtaacctcaag
tgccacactcggggcggcctagtcatgtttgattacccaatggatgaaggggctgatatg
cacagtctcctcatgactgacaacaacatgatgctcatgggcggattacagaactatgtg
gttgaatttgatttgaatactgttcaagaaactcaaaggttcactgttgatatgcctgga
attgcaataatgcgccaaaccggtcgtttcttcttctgtggtcacacttctggcaaaata
acccttcgagacttacgctccttcaagacggagcatgagttcgatgcgttctctggcagc
ctctcggacttcgacgttcacggaaaccttctggctgcgtgcggcttctccagccgagga
ctgaacgggttggcatgtgaccgtttcctcatggtgtacgacctccgcatgatgcgagcc
gtaacgcctcttcaagtgcatgttgaccctcttttcttgcgcttcattcctacctacacg
tcacgcctggcgatcatctcacagacaggtcagtgccagttctgtgagcctactggtctt
gccaacttggccgatgttttccacgtcaacacggtgggccagttgctcatgagttttgac
gtatcgtccagtaaacaagctttggcctttggggactctgggggttgtgtgcacctgtgg
tctgatgctccagaggtttcattcaacgactactctcgggagacagagttcgccttgccg
tgcctcgtggacacgctgcctcagctggactggaaccacgacctgctgccgatctctctc
atccccatgccgctgaccagcacagagccgttgctgtcagactggcccactaatgtggct
acaccgagccccagacgagctccacctgtggacccagaaatcctgcgcacaatgaagacc
gtcgggttcatcggttacgcagcaaatcctcgaacacgccctcgaaaccaggttccgtat
aaaattaaagacgtggagctcgattatgataattacaaccaggttcctgaatcaccaatc
ggccgtgatgaagagccgcatctctacatggtgccaaagaagtacagaaaggtcaccatt
aaatactctaaactgggactcgaggactttgacttcaaacattacaacaagactttgttc
gctggcctggagcctcacatccccaacgcctactgcaactgcatgatccaggttttatat
ttcctggagccaattcggtgtctagtgcggaatcatttgtgccagaaagagttttgtttg
gcctgcgagctcggcttcctcttccacatgttggatttgtctcgaggagatccgtgtcag
gccagcaacttcctccgagcgtttcgtaccatccctgaagcgtcggcgctcggtctgatc
ctcgcagactcggacgagcaaacggggaaggccaggctgggtcgcttgatccaaagctgg
aaccgcttcatcctcactcagctccaccaggagacgcaggagcaggagggtcctcaggcc
tacagaggagccagcagcagttctctgggctcttctggtgagtctgccatcggaaagctg
tttggatgtgaagtagagaacagcagcctgtgtcgctgcggtaaggagacggtccgcacc
tccctcacgctgctcttcaccatgcactaccccgagcaaaactctcaagaaaagacagta
aaggagtacgacttcgctgagatcctgaagaagagcatctgtctggagcagagcactcag
gcgtggtgcgagaactgcgagaagtatcaacccacagtgcaaacacgaaacatccgatgt
ctaccggatgttttggtcatcaactgtgaagtaaacagcgctaaagaggctgaattctgg
aaagttcaggcagagtacgccttcaataaagcaaagcaaaaagaggcgatggaacctgca
aaacctaaagagccgcctccacccatgcccaccgagtggtgtctggatggggaggagatg
gtaaatatggagggtttcacctttgacacccgggcggaggatctgagacacgtctggatc
cctgtcactctgaagatgtccatcagtaaaactcagggactggaggtctgcagctggcct
gaaggagaggagttaagtactgctgaagaggaggagggcgcgtctctctatgacttggtg
gtcacggtgccgcacgtcctcgacgctcgcacgggcggaaacctggtcgcgcacatcaaa
gtgggagagacgtatcatcaaagaaaagagggcgtcacacaccagcagtggtaccttttc
aatgatttcttaattgagccaatcgacaaggctgaagctgctcagtttgacgtgagctgg
aaggtgccggccatcctgtattacgccaagaggaactatcacaccaaatacgacctccgc
atgaaaaatcccattgacgccagcgtgctgctgaccgaggcctcgctggctcggaagcag
aggaagagtcacgccactttcatccctctcatggtcagcgagatgccgcaggctggcgac
ttggtcgggctggacgctgagtttgtcacactcaaccaggaagaggcagaactgcgcagt
gacggcaccaagtcgaccatcaagcccagtcagatgtctgttgcccggatcacctgtgtg
aggggtcaggggcccaatgagggggttcccttcatcgacgactacatctccactcaggag
caggtcgtggactatttgacgcagtattctggcatcaaaccaggcgacctggatgcaaag
atttcttcaaagcatttgaccactctgaagtcgacctacctaaagctgcgtttccttatc
gacacgggggttcgctttgttggtcatggcttacagaaggactttcgggttattaactta
ttggttctgaaagatcaagtagtcgacacggtccacctgttccatctgcctcgcaaaagg
atgatttctctgagatttctcgcctggtactttcttgacctcaacatccagggggaaacc
cacgacagcatagaggatgcacgcaccgctctgcagctgtacaggaagtacctggagctg
agtcgtggaggtggctccgatgaagtgaggaaggtcctaaagggactctacgagaaaggc
cgccaaaaggactggaaagtcccggagtcagacccaggagatggtcaaggtagcccaaaa
agtgctcctgccgtgtatccctctgtgctgggactgtga
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