KEGG   Scomber scombrus (Atlantic mackerel): 133987449
Entry
133987449         CDS       T10651                                 
Symbol
bcas2
Name
(RefSeq) pre-mRNA-splicing factor SPF27
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133987449 (bcas2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ssco03041]
    133987449 (bcas2)
   03400 DNA repair and recombination proteins [BR:ssco03400]
    133987449 (bcas2)
Spliceosome [BR:ssco03041]
 Complex B
  Other components
   Prp19 complex
    133987449 (bcas2)
 Complex C
   Prp19-CDC5 complex
    133987449 (bcas2)
DNA repair and recombination proteins [BR:ssco03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    133987449 (bcas2)
SSDB
Motif
Pfam: BCAS2 Sterile RRP36 THOC7 FtsK_SpoIIIE BRISC_FAM175B_helical
Other DBs
NCBI-GeneID: 133987449
NCBI-ProteinID: XP_062282810
LinkDB
Position
10:8242009..8245670
AA seq 225 aa
MAGTASVAGEVFVDALPYFDQGYDAAGVREAAAALVEEETRRYRPTKNYLSYLITPDFST
FETEIMRNEFERLAARQPMDLLSMKRYELPAPSAGQKNDITAWQECVNNSMAQLEHQAVR
IENLELMSQYGTNAWKVYNDNLAFMIEMAQKELQKFRKQIQDLNWQRKNDQLAGGAKLRE
LESNWVSLVSKNYEIERAIVQLENEVAQLRQQQGDENKENIRQDF
NT seq 678 nt   +upstreamnt  +downstreamnt
atggccggaacggcttcggtagccggtgaggtgtttgtcgatgctttgccatattttgac
caaggttacgatgcagcaggtgtcagagaagcggctgcggcgttggtggaggaagagacc
agaagatacagaccgaccaagaactacctgagctacctaatcacgcctgacttctctact
tttgagacagaaatcatgaggaatgaatttgagcggctggcggcccggcagcccatggat
ttgctgagcatgaagagatatgagctgccggcgccctctgcaggacagaagaatgacatc
acagcatggcaggagtgtgtgaacaactcaatggcccagctggagcaccaagcggtccgt
atcgagaacctggagctcatgtcgcagtacggaaccaacgcgtggaaagtctacaatgat
aacttggccttcatgattgagatggctcaaaaggagcttcagaaattcaggaaacaaatt
caggatttaaactggcagcgtaagaacgatcagttagcaggaggagccaaactgcgagag
ctggagtcaaactgggtgtctctggtcagtaagaactacgagatcgagcgggccatcgtt
cagctggagaacgaagtggctcagctcagacaacagcagggggacgagaacaaggagaac
atcagacaggacttttag

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