Scomber scombrus (Atlantic mackerel): 133987464
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Entry
133987464 CDS
T10651
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133987464 (rbm39b)
Spliceosome [BR:
ssco03041
]
Common components
Common spliceosomal components
General mRNP proteins
133987464 (rbm39b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
133987464
NCBI-ProteinID:
XP_062282829
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Position
10:complement(20076960..20084618)
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AA seq
498 aa
AA seq
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MADDFDVEDLLEAPYRKDEIKSSHANGHDDQHKKKRRSRSRSRSPGSRKKRSRSKDKKKG
KKRSKSREKKRSRSKERHRSRSRSKERSGRYRARRSPVRKRSKSRSPFRKEKSPIRQPID
NLTPEERDARTVFCMQLAARIRARDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVE
ASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAANNLQKGSSGPMRLYVGSLHFNITE
EMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFSDAECAKKALEQLNGFELAGRPMKV
GHVTERSDSSTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLKIPPAAQQALQMTG
SIPFGNIAATTAVPTPAPSQALNLPSQPLATHCLQLSNLFNPQSENDPSWAIEIQDDVIE
ECNKHGGIVHIYVDKNSAQGNVYVKCPSIPAAMATVNALHGRWFAGKMITAAYVPLPTYH
NLFPDSVTAKQLLMPARR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgattttgacgttgaggacctgctggaggctccatacagaaaggatgagatc
aagtcctctcatgcaaacggacatgacgaccaacacaagaagaaaaggaggagccggagc
aggagccggagcccaggctctaggaagaaaagaagcagaagcaaagacaaaaagaagggc
aagaagaggagcaagagcagggagaaaaaacgaagccgcagcaaagagcgccatcgcagc
cgctcccgaagcaaggaacgttctggacggtacagagcacgcagaagccctgtccgaaaa
cgttcaaaaagtcgcagccctttcagaaaagagaagagtcccattaggcaaccaattgac
aatctaacaccagaggagagagatgcccgcacagttttctgcatgcagcttgctgcgaga
atcagagctcgagacctggaggatttcttctcagctgttggaaaagtaagagatgtgaga
atgatctctgatagaaactccagaagatcaaagggcattgcatacattgagtttgtggag
gcttcgtctgtaccactggctatcggactgactggccagcggcttttaggagtgcccatc
atcgtccaggcctctcaggcagagaaaaacagagctgctgctgctgctaataatctacag
aaaggcagctcaggtccgatgcggctgtacgttggctctctgcacttcaacattaccgaa
gaaatgcttcgagggatcttcgagcctttcggaaagattgaaggaatacagctcatgatg
gacagcgaaactggacggtccaaaggatacggcttcatatcgttttcagatgcagaatgt
gcaaaaaaggccttggagcaattgaatggctttgagctggccgggcgtccgatgaaggtg
gggcatgtcacagagcgctcagactcatcgacggccagctcgttcctggacaatgatgaa
ctagaaaggactggcatcgacctcggcaccacaggacgtctacagctcatggctcgtcta
gcagaaggaactggtctgaagattcctcctgcagctcagcaggctctacagatgactggc
tccataccctttggaaacatagccgctacaacagctgttccaactccagctccaagtcaa
gccttgaaccttccatcacagccgctggccacacactgccttcagctgtctaacctgttc
aacccacaatcggaaaacgaccccagctgggccatcgagatccaagatgatgtcatcgag
gagtgcaacaaacacggaggaatcgttcacatttatgtcgataagaactctgctcaaggt
aacgtgtatgtgaagtgcccctcaataccagcagcgatggcaactgtaaacgcacttcat
ggacgctggtttgcaggcaaaatgataacagccgcctacgttcccttaccgacctaccac
aaccttttccccgattcagtgacggcaaagcagcttctaatgccggcccgtcgatag
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