Scomber scombrus (Atlantic mackerel): 133987501
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Entry
133987501 CDS
T10651
Symbol
clstn1
Name
(RefSeq) calsyntenin-1
KO
K22659
calsyntenin 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ssco04515
]
133987501 (clstn1)
Cell adhesion molecules [BR:
ssco04515
]
Cadherins
Cadherin related
133987501 (clstn1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
FAM176
EphA2_TM
PRIMA1
Toxin_R_bind_N
V_ATPase_I
PFF1_TM
Cadherin_C_2
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
133987501
NCBI-ProteinID:
XP_062282877
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All DBs
Position
10:complement(13580886..13615673)
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AA seq
981 aa
AA seq
DB search
MRFRGNTQFASAVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTLTEEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRTKDKLDCELQKE
HTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICNYEIVTPDVPFTVDKDGFIKNTEKLSYGKERMYKLTVTAYDCG
KNRASEDVLVKISVKPTCKPSWQGFNKRIEYEPGTGSLALFPSMHLETCDEPITSIRASI
ELETNHIGKGCDRDTYSEKSLHKLCGASSGTVELLPAPSSSANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPDGMVSTSLKDPFTISVWMRHGPGAHEKETILCNSDKTEMNRHHYSLYVH
NCRLIVLLRQDPSETENYKPAEFHWKLDQVCDKEWHHYVLNVEFPTVSMFVDGTTFEPFL
VTEDYPLHNTKIETQLTIGACWQENSGHDNDTETVSEPTSGGNARMAQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEVASTVKVEFNPNQSSLTVEGDDIDAFDKVMQHI
SYLNSRQFPTPGIRHLRISTTVKCFNEESCVTVPDAEGYVMVLQPEEPKISLSGIDHFAR
SAAEFESQEGVTLFPELRIVSTITREVEADTESEAAEGADDDPTVQETVVSEEIMHNLDT
CEVTVVGDELDGEHEGLEVDMSQLQQRALEMSSSNLGLVITGVNTMANYEQVLHLIHYKN
WHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPMEHVNNAMVQPNFINPIHHAS
VDLSGHNLVNAHPFAVVPSAATIVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQENGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEDEEGGEP
EDQQGTSRQQQLEWDDSTLTY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcggttccgagggaatacacaatttgcatccgctgtcggactggtcctcggactatta
tgtgcggtggaggcagctaaagtaaataagcataaaccatggatcgagacgacgtaccac
gggatcgtaacggaaaatgatgacaaagtgcttctggacccccctctaattgctctggac
aaggatgctcctctccgctatgcagagagttttgaggtgaccctcactgaagaaggtgag
atttgcggcttcaggatccatgggcagaatgtcccctttgaggcagtggtcctggacaag
tccactggcgagggtgtcatccggaccaaggacaagctggattgtgagctgcagaaggag
cacacctttactatccaagcatatgactgtggagaaggtcctgatggtgccaatatgaag
aaatcccacaaggccactgtccacatccaggtgaacgacatcaatgagtattcaccagtg
ttcaaggagaagtcctacaaagccactgttatcgagggaaagaagtatgacagcatcctg
aaggtggaggcagtggacgccgactgctctttccagtttagccaaatctgcaactacgag
attgtcacccccgatgtgcccttcaccgtcgacaaagatggcttcatcaagaacacagag
aaactgagctacggcaaagagcgcatgtacaagctgactgtgaccgcctacgactgtggg
aagaaccgcgcctctgaggacgtcctggtcaagatcagtgtcaagccaacctgcaaaccc
agctggcaaggcttcaataagaggattgaatacgaacctggcacaggcagtctggccctc
tttcccagcatgcacttggagacctgtgatgagccaatcacctccatccgagccagtatt
gaactggagaccaaccatattggaaagggatgcgaccgtgacacctactctgagaagtcc
ctgcacaagctttgcggagccagctccgggactgtggagctcctgccagcacccagcagc
tctgccaactggacagtggggctgcccactgataatgggcatgacagcgaccaggtgttt
gagttcaatggcacccaggccatcaaggttcctgatggcatggtgagcaccagcctgaag
gaccccttcaccatctctgtttggatgagacacggccccggggcccatgagaaggaaact
atcctctgcaactcggataagacagagatgaacagacaccactactcgctctacgtgcac
aactgcaggctgatcgttctcctccgccaggatccatcagagactgagaactacaaacca
gcagagtttcactggaaactcgaccaggtgtgtgacaaagagtggcatcactatgtgctg
aatgtggagttccccactgtgtcgatgtttgtggatgggaccacctttgagcccttcctc
gttaccgaggactacccactgcacaacacaaagatcgaaactcagctcaccattggtgcc
tgctggcaggaaaactcaggacatgacaatgacactgagacagtctctgagcccacctca
ggcggaaatgctcgaatggctcagtttttccgggggaacctggcagggttgatgatccgc
tctggcaagctggagaacaagaaggtgatcgactgtttgtacacctgcaaggagggcctg
gatgtgcagctgcctgaggaggtagcttcaactgtcaaggtcgagttcaaccccaaccag
tcctccctcactgtggaaggtgacgacattgatgcctttgataaggtcatgcagcacatc
tcctacttgaactcccgccaattcccgacccccggcatcaggcatcttcgcatctccacc
actgtcaaatgcttcaatgaggagtcctgtgtaaccgtcccggatgctgaaggttacgtg
atggtgctgcagccggaagagccaaagatcagcctgagcggaattgaccactttgcccgc
agcgctgccgaattcgagagccaggaaggtgtgacgctgttccccgagctgcgcattgtg
agcaccatcacccgagaagtggaggccgacaccgagtctgaagctgctgagggagctgat
gatgaccccacagttcaagaaacagtggtgtcagaggagatcatgcacaacctggacaca
tgtgaagtgaccgtggtgggagatgaacttgacggggagcatgagggcctggaggtcgac
atgtcccagctgcagcaacgtgccctggagatgagctcttctaacctcggcctcgtcatc
accggcgtgaacaccatggccaactatgagcaggtcttgcatcttatccattacaagaac
tggcacacagaggctctctttgacaggaaattcaaactggtctgctctgaactcaacggt
cgctacatcagcaatgacttcaaggtcgaggtgaatgttatccacacagccaatcccatg
gagcatgttaacaatgccatggtgcagcccaacttcatcaaccctatccatcacgcctct
gtggatctgtctggtcacaatctggtcaacgctcacccctttgcagtggttcccagcgcc
gccactattgtcattgtcgtgtgtgtcagtttcctggtgttcatgatcatcctgggtgtg
ttccgcatccgagctgcacaccagcgcaccatgagagaccaagagaatggcaaggagaac
gagatggactgggacgactcagcccttaccatcacagtcaatcccatggagacgtacgag
gaccagcacagcagtgaggaggaggaggaagaagaggaagagagtgaagatggagaggag
gaagatgacatcacaagtgctgagtcagagagtagcgaagacgaggagggtggggagccg
gaggaccagcaggggaccagcagacagcagcagctggagtgggatgactccaccctcacc
tactag
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