Scomber scombrus (Atlantic mackerel): 133987605
Help
Entry
133987605 CDS
T10651
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
133987605 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssco03400
]
133987605 (xpc)
DNA repair and recombination proteins [BR:
ssco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
133987605 (xpc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
133987605
NCBI-ProteinID:
XP_062283017
LinkDB
All DBs
Position
10:10084879..10097002
Genome browser
AA seq
922 aa
AA seq
DB search
MGKRRECAETPADTKKLKQGLKAKSNRAKERAKKTDAEEDGEIKRKVKSKPRSSTKQAAR
NTSSTTSTTSTSAVKTSKYFQSPVKEEEIDSEDDFDMVTSPTRMVKVTAKKPEKEEEEED
SEEDEDDWEEVEELAGPLGPVEPAEPVLPSHPVEIEIESPEVRKKQKRQAEFEAYLRRMM
NRFKKDVLVDTHKVHLMCLIANGMFRNRVCSEPDLLAITLSLLPAHFAAVAKERIDQNYI
SGLLRWFRATFTLNSSLPYEERPDPRALLERRLASVSARNHQEMTHLFLLVLRSLQLFCR
LVLSLQPIPLKPPSAKGKGAKTSPGAPGKNQGASKTSPPEPKVSPGTKRPAGGGKTKGDR
GGKKAKRKEIKEEEEEAATYGRQKPKNSKRRSVASKVSYKEDSNTEGEKEDEGLSDEEDF
QLTSEDDSDDFEDGAKTSKGRGSSKAKVTNSKSTTASKSMSGGGENQVKDEKDKEGEEND
DEEGTKNNQTKRRSGKRREGPGTDEWLEVFLEKSSSWVCVDVEHGVAMPQLCSQNATAPV
TYVVAVDGDGFVKDLGRKYDPTWMTSSRKRRVEEEWWEETLVPFLGPEDERDVKEDKEME
KRLLNKPLPISVAEYKNHPLYALKRHMLKYEAIYPPTATILGYCRGEPVYSRDCVHTLHS
KDTWLKEAQTVRLGEEPFKMVRGFSNRSRKARMMAEMKDQNDLALFGEWQTEQYQPPIAV
DGKVPRNDYGNVYLFKPCMLPVGCVHVRLPNLNRVARKLDIDAAPAVTGFDFHGGYSHAV
TDGYIVCEEHEEVLRAAWMEEQELQKQKEREKREKRAISNWTLLVKGLLIRERLKQRYGK
KNLDPVSLAHTQGGGDENGGLSSDEEVIEGGGSGAMTASETLAMSWPQNRQTEEDSGSVS
GLKKTKRGKKGQEKHLFPFEKV
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcggagagagtgtgcagagacaccagccgatacaaagaaactaaagcagggg
ttgaaggcaaagagcaaccgagcgaaggaaagagcgaagaagacagatgcagaagaagat
ggggagatcaagaggaaagtcaaatcaaagcctcgttcctccacgaaacaagctgcaaga
aacacctcttctaccacatccaccacctccaccagtgctgtcaaaaccagtaaatacttc
cagtcaccagtgaaggaggaggaaattgacagcgaggatgactttgacatggtgacctca
ccaacacgtatggtcaaggtgactgcaaagaaaccagagaaggaggaagaggaggaggac
agtgaggaagatgaggatgattgggaggaagtggaagagctggctgggcctctgggtcca
gttgagccagcagaacctgtcctgccctctcatccagtagagattgagatcgagtctcca
gaagtcaggaaaaagcagaagaggcaggctgagtttgaggcatatctgaggcgaatgatg
aaccgattcaagaaggacgtactggtggacacacacaaggtccacctgatgtgcctgata
gccaatgggatgtttcgcaaccgtgtgtgcagtgaaccagacctgctggccatcactctg
tcgctgctgccggcccacttcgccgcagtggccaaagaacgcattgaccaaaattacatc
tctggactgctcagatggtttagagcaacgttcaccctcaactccagtcttccctatgag
gagcgtccggacccacgggctctgctggaaaggaggttggccagcgtctcggcgagaaac
caccaggagatgactcatctgttcttattggtcctgaggtctttgcagctcttctgccgg
ttggtcctttctctgcagccaattcctctcaaacctccatcagccaagggcaaaggggct
aaaacatctcccggtgctccaggaaagaaccagggagcatccaagaccagcccaccggaa
ccaaaagtctctccaggcaccaagagaccagctggaggagggaagaccaagggagacaga
ggagggaagaaagctaagaggaaagaaataaaagaggaagaggaggaggctgcaacgtat
ggccgtcaaaagccaaagaactcaaaacgccggagtgtcgcctcaaaggtcagctataag
gaagatagcaacactgaaggtgaaaaggaggatgaggggctcagtgatgaggaggatttt
cagctgaccagtgaggacgacagcgatgattttgaggacggggccaaaacttcaaagggg
agagggagcagcaaagccaaagtgaccaacagcaagagcaccacagcctcaaagagcatg
agcggcggaggggaaaaccaggtgaaagatgaaaaggataaagagggtgaagaaaatgat
gatgaagaaggaacgaagaacaaccaaacaaagcgaaggagcgggaaaaggagagagggg
cctggaacggacgagtggttggaggtgtttctggaaaaatcatcctcctgggtttgcgta
gatgtggagcacggtgtcgcgatgcctcaactctgctcccagaatgcaacagcgccggtg
acgtacgtggtggcagtggacggggatgggttcgtgaaggacctggggagaaaatacgac
cccacctggatgacatcgtccaggaagagaagggtggaagaagaatggtgggaggaaacg
cttgtgccgttcctgggaccggaggatgagagggacgtgaaggaggacaaggagatggag
aaaaggctgctgaacaaacccctgcccatctctgtagcggagtataaaaaccacccactg
tacgccttaaagagacacatgctgaaatacgaagccatctacccccccacagccactata
ctgggatactgccgaggagagccagtgtactccagggattgtgtgcacaccctccactcc
aaagacacatggctgaaagaagcacaaactgtccgattaggagaagagccattcaagatg
gtgaggggcttctctaatcgttcccgtaaggccaggatgatggctgagatgaaggaccag
aatgacctggctctgtttggagaatggcagaccgaacagtaccaaccgcctatagctgtg
gatggaaaggttccccgtaacgactacggtaacgtctacctgttcaagccctgtatgtta
ccggtgggttgtgtccatgtcaggctgcccaacctgaaccgtgtggccagaaagctggac
attgacgccgcgccagcagtcactggcttcgacttccacggaggatactcgcacgctgtc
acggacggttacattgtgtgtgaggagcatgaggaggtgctcagagctgcctggatggaa
gaacaagagcttcagaaacaaaaggagagagagaaaagagaaaagagagctatctccaac
tggactctgcttgtgaaggggctcctgatcagagaaaggcttaaacagcgctacggcaag
aagaacctggaccccgtgagcctcgctcacactcaaggcggtggagacgagaatggtgga
ctttcctctgatgaggaggtgattgagggtggaggttctggagctatgacggcatctgaa
actctggcaatgtcctggccccaaaacagacaaacagaggaggacagtgggagcgtcagt
gggttgaagaagactaaacgagggaagaaagggcaagagaaacatttgttcccctttgag
aaagtgtga
DBGET
integrated database retrieval system
