Scomber scombrus (Atlantic mackerel): 133987613
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Entry
133987613 CDS
T10651
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssco01009
]
133987613 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133987613 (hdac6)
04131 Membrane trafficking [BR:
ssco04131
]
133987613 (hdac6)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133987613 (hdac6)
Enzymes [BR:
ssco01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
133987613 (hdac6)
Protein phosphatases and associated proteins [BR:
ssco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133987613 (hdac6)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
133987613 (hdac6)
Membrane trafficking [BR:
ssco04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133987613 (hdac6)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
133987613 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
133987613
NCBI-ProteinID:
XP_062283029
LinkDB
All DBs
Position
10:complement(28719228..28738318)
Genome browser
AA seq
1136 aa
AA seq
DB search
MPSGSDPPGSEVKSVRRSPRLSPQDTSSKKGDEEKKGESSLQKAKRKGRMERNREDELDV
KLQQLDLSSRAAATGTGLVYTETFTHHKNLWEPSHPESPDRVTFIMKELERQELLSHCVR
VEPREATEGELLLAHMKHYVDLMKSTQTMSESELQTLSDKYDSVYLHPESFQVCLLAVGS
VLQLVDQVMTSQLRNGFAVVRPPGHHAQCNESNGFCVFNNVAIAARYAQTKHKVSRVLIV
DWDIHHGQGIQYQFQEDPNVLYFSVHRFEQGSFWPHLPESDCHFVGSGRGEGRNINLPWN
KTGMTDADYISAFQQLLLPVAHEFQPQLVLVSAGFDAAVGDEKGEMCVSPQCFQVLTHML
MSLAEGRLILALEGGYNLQSTAEGAAACVRALLGGACPPLTLPTAPCDSALQSISKTISA
LYPYWACLQVLEGVQLTEGRVIRATTNKESTQATSPADSVAMTTGLVYDERMMEHQNMWD
RHHPEQPQRISKIFSKHQQLGLVDRCQRIPARLATEEELAMCHSVEHIEQMKSTAEMKPR
DLNKLGNEFNSIFINNQSFQSALLAAGSCFNAVETILNGQVSNGVAIVRPPGHHAERDFP
CGFCFFNTAALAARYAQKISHNPRLRVLILDWDVHHGNGTQHMFEDDDSILYISLHRYDN
GVFFPSSEDAAPDKVGVAKGAGFNVNVAWSGGRMGDPDYLAAFHHVVMPIATEFNPGLVL
VSAGFDAARGDPLGGYNVTPEGYAHFTNMLMSLAGGRVLLILEGGYNLSSISDSMAMCTS
MLLGDPPPSLVTPFPPPHHSAVVAINEVVRHHAPYWRSLRINIPESVRASLPSPKHRGKR
SSKGKGRKSDQSSTDKPPLPRSGQEADSSLEQLTQGLASLDITQTSSNPASATSTPVGGA
RPKARRSVEKVVCESEVKTEPSEVKTEPSEVKTEPSEVKTEPSEVKTEPSEVKTEPSGVI
PEQSQSAESTQPQPVAVAPSESVAVGDEAAAGAEAEPEPEGACGWTKPQSALELTCQVQM
DGAPMFVVDPLTWCPHLDAVKSLPPSGIDVFQSCQDCGSEAENWICLTCYEVFCGRYVNE
HMVIHGTVSEHPMVLSFCDLSAWCYQCESYVHNQVLFEAKNAAHFAKFGEEIPPWS
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctggatcagatcctccgggatctgaagtgaagtcggtcaggagatctcctcgt
ctgtcccctcaggacacgagcagcaagaaaggagacgaagaaaagaaaggagagagcagc
ctgcagaaggcgaagaggaaaggaaggatggagcgaaacagagaagacgagctggacgtc
aaactgcagcagctggatctctccagcagggcagcagctactgggaccggtctggtttac
actgagaccttcactcaccataagaacttgtgggaaccaagtcatcccgagagtcccgac
agagtgacgttcatcatgaaggagctggagagacaagagctgctgtctcactgcgtcaga
gtcgagcccagagaagctaccgaaggagagctgctgctcgctcacatgaaacattacgtg
gacctgatgaagtcgactcagacgatgtcagagagtgaacttcaaactctgtctgacaaa
tacgactccgtttacctccatcctgagtccttccaggtgtgtttattagcggtgggatcg
gtcctgcagctggtcgatcaggtcatgacctctcaactcagaaacggatttgcggttgtc
agacctccaggtcatcacgctcagtgtaatgagtcaaacggtttctgtgttttcaacaac
gtggcgatcgcagctcgttacgctcagaccaaacacaaagtcagcagggtgttgatagtg
gactgggacattcatcacggtcaaggcatccagtatcagttccaggaagacccaaatgtc
ctctacttcagtgtccacaggttcgagcagggatctttctggcctcacctcccagagtcc
gactgtcactttgtcggcagcggacgaggtgaaggacgaaacatcaacctgccctggaac
aaaacggggatgaccgacgctgattacatctcagctttccaacaactgctgctgcctgtc
gcccacgagtttcagcctcagctggttctggtctctgccggttttgatgctgcagtcgga
gatgaaaagggtgagatgtgtgtgagtcctcagtgtttccaggttctgactcacatgttg
atgagtttggctgaaggtcgactcattctcgctctggagggaggttataacctgcagtcg
acagcagagggcgcagcagcctgcgtcagagctctgcttggaggagcctgtcctcctctg
actctgcccaccgctccatgtgacagcgctctgcagtccatctctaagaccatctcagct
ctttatccatattgggcctgtctgcaagttctggaaggcgtccagttgacggaggggcgc
gtcattagagcaacaaccaacaaggagagcacacaggcgaccagccctgccgactctgtt
gccatgacaacgggcctggtgtacgatgagaggatgatggagcatcagaacatgtgggac
agacatcatcccgaacagccgcagagaatctccaagatcttctccaaacatcagcagctg
ggattggtcgaccgttgccaacggataccagcgcgcttggcaactgaggaggaactcgcc
atgtgtcacagtgtggaacacatcgagcaaatgaaatccacagcagagatgaagcccaga
gatttgaacaaactgggaaacgagttcaactccatcttcatcaacaaccagagcttccag
tccgctctgctggctgctgggagctgcttcaacgctgtggagacaatactgaacggacag
gtgagtaacggcgtggcgatcgttcgtcctcccggtcatcacgcagagagagacttccct
tgcggtttctgcttcttcaacacggcggcgctcgctgctcgctacgcacagaaaatctcc
cacaatccacggctgcgagtcctcatcctggactgggatgttcaccatggcaacgggacg
cagcacatgttcgaggatgacgacagcatcctctacatctccctccatcgctatgacaac
ggggtgtttttcccgtcgtcagaggacgccgcaccggacaaggtgggcgtggccaagggg
gcggggttcaacgtcaacgtggcgtggagcggcgggcggatgggcgaccccgactacctc
gccgcctttcaccacgtcgtcatgccaatcgccaccgagtttaaccccgggctggttctg
gtgtcggctggattcgacgctgcacgtggggatccgctgggtggatataatgtgactccg
gagggatacgctcacttcacgaacatgctgatgtcactggcgggggggcgagtcctactt
atactggagggaggttacaacttgtcgtccatctctgactccatggcgatgtgcaccagc
atgttgctcggcgacccgcctccctccctggtgacacccttcccccctcctcaccacagc
gctgtggtggcgatcaacgaagtcgtccgacatcacgccccctactggaggtcgctgagg
ataaacatcccagagtccgtccgggcttcgctgccctccccaaagcatcgtgggaaacgt
agttctaaaggaaaaggcaggaagtcggatcagagcagcacggacaaaccaccgctgcct
cgttcaggacaagaggcggactccagtctggagcagctcactcagggattggccagtttg
gacatcactcaaacttcgtccaatcccgcttccgctacgtcgaccccggtgggcggggcc
agaccaaaggcccgccgcagcgtagagaaggtcgtctgtgaaagtgaagtgaagacggag
ccgagtgaggtgaagacggagccgagtgaggtgaagacggagccgagtgaggtgaagacg
gagccgagtgaagtgaagacggagccgagtgaggtgaagacggagccgagtggggtgata
cccgagcagagccaatcagcagagagcacgcagcctcagcctgttgccgtggcaccgtca
gaatctgttgccgttggagacgaggctgcagctggagcagaggcggagccagagccagag
ggggcgtgtggttggacgaagcctcagagcgctctggagctgacgtgtcaagttcagatg
gacggagcccccatgttcgtggtggacccgctgacctggtgtcctcacctggatgcagtg
aagtccctccctccctccggtatagacgtcttccagtcgtgtcaggactgcggctccgag
gctgagaactggatctgtctcacatgctatgaggtgttctgtgggcggtacgtcaacgag
cacatggtgattcacggcaccgtgtctgaacatccgatggtcctcagcttctgtgatctg
tctgcgtggtgttaccagtgtgagtcgtatgtgcacaaccaggttctgtttgaagctaaa
aacgctgctcactttgccaaattcggagaggagatccctccatggagctaa
DBGET
integrated database retrieval system
