Scomber scombrus (Atlantic mackerel): 133988114
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Entry
133988114 CDS
T10651
Symbol
rnf38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ssco04121
]
133988114 (rnf38)
Enzymes [BR:
ssco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133988114 (rnf38)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133988114 (rnf38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
VPS18_RING_C
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
133988114
NCBI-ProteinID:
XP_062283650
LinkDB
All DBs
Position
2:complement(8146876..8169978)
Genome browser
AA seq
747 aa
AA seq
DB search
MPIAAAGQPTTREPRVCPRLPSTPEPVPKGADLFDEAGAAESAERTDYGGAEGGRGLGGY
SYSQSGARGFVQPGSTNSSPPQSPAASSSFLFHPLHAHQMAMEPPRTRSRSRSGYYQQYG
GGNGNGITGSGVMGSNHHHHHHSHHHQQQQQQLHPQQQHGAGCAPLGAHSTHPDNQQRAP
GSNTPPGIQRLSSVPGAHRIPAAGASGGSYHCHPDHAYGEESDKSEESPSPKRQRLSSQS
VLEQLTSSAPPPSTPSPPIRPWESGPPSRRQPHPHTHYHQERCLTPARHRRSPPARRQRG
RLSRPARHLPPHHHPSTQGPAPRLSPSELQDENYHHSHHPSTHQTYPTHTPSSYGQPPTT
GGGVAGTEEPRAFHPPTLSPRLLHPAAHHHHHHHHQQQHHATQQQQGAMVMDLHEQLQQG
SVPVSYTMTPVPPHGLAAPLCSSQHLPPTCSSQQQVPACSVVFSTGQHYHPMLQACSMQH
LPVPYAFPSLLSSDPQFLLPPPPHLSHHPPHLPTPGQFLPFQTQQPRSPLQRIENEVELL
GEQLSVGGGFSYAHHHHHHHHHQPPSTLPPSTPLQFLSHHDPLSQELFTVPYPHFMPRRF
TGRRYRSQQAVPPSPYHPSFLPYFLSMLPVPPNVAPTISLELDVDDGEVENYEALLNLAE
RLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAK
CVDKWLKANRTCPICRADASEVQRDSE
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcgcagccgctggacagccaacgactcgggagcccagagtttgcccccggctg
ccctccaccccggagcctgtccctaaaggggctgatttattcgacgaggcgggggcggcg
gagtcggcggagcggacagactacgggggcgcagaggggggcagaggactcggaggctat
agttacagccagagcggcgctaggggctttgtacagcccggatccaccaacagctctcca
ccgcagtccccagccgcgtcctcctcttttctcttccacccccttcacgcccaccaaatg
gccatggagcccccaaggactcgatcgcgttctcggtctggatattaccagcagtacggt
ggtgggaatggtaatgggattacaggcagtggagtcatgggatctaaccatcaccaccac
caccatagccaccaccatcagcagcagcagcagcaactgcatccacagcagcaacacggt
gccggctgcgctccgctcggagctcacagcacccacccggacaaccagcagcgagccccg
ggaagtaacacccctcctggcattcagaggctttcttcggttcccggagcgcaccgcatc
ccggcagcaggagcctccggcgggtcttaccactgccacccagaccatgcatacggagag
gagagcgataagagtgaggaaagccccagtccaaagcgccagaggctgtccagtcagtcc
gtcttggaacagttgacctcatccgcccccccaccatccaccccttctccccccatccgc
ccctgggaatcaggacccccaagtcggagacaacctcacccccacacgcactaccaccaa
gagagatgcctcacccccgctcggcacagacgcagcccgccagcaaggcgacagcgcggc
cgactctccagacccgcccgtcacttgcctccccatcaccacccctccacccaaggcccc
gcacctcgcctgtcaccgtcggagctccaggatgaaaactaccaccatagccaccacccc
tccacacaccagacgtacccgacgcacacccccagctcctacgggcagccccccacaacc
ggaggcggggtggcaggtaccgaagaaccccgagctttccacccccccaccttgtcccca
cggctactgcacccagctgctcaccaccaccatcaccatcatcatcagcaacaacatcac
gcaacgcaacagcagcaaggagccatggtcatggacttacatgaacagctccagcagggc
agcgtaccagtctcctacacgatgaccccagtccctcctcacggcctcgcagcacctttg
tgcagcagtcagcatcttccccctacctgttcttcacaacaacaggtccccgcctgcagt
gtggtcttcagcactggacaacactaccacccgatgctacaggcgtgttcaatgcaacat
ttgccagtgccctacgccttcccctcgctgctgtccagtgaccctcagttcctgcttccc
cctccaccccacctctctcatcacccgccccacctccccacacccggacagttcctgcct
ttccaaacgcaacagccaagatcgcccttacagaggatcgaaaacgaggttgagcttctt
ggggagcagctttcggtgggcggaggcttcagctacgcccaccatcaccaccaccaccat
caccaccagcctccctccacactaccgccctccacgccactccagttcctctcgcaccat
gaccccttgtcacaggagctctttacagtgccctatcctcactttatgcctcgccgattc
acaggccggcgttaccgctctcagcaggctgttcccccgtcaccataccaccccagcttc
ctgccttatttcctgtcgatgcttcccgtccccccaaatgttgcccccactatcagtcta
gaactggatgtggatgatggagaggtagagaactatgaggccctgctgaacctggcggag
cgtctcggagaggcgaagccccgtggtctaactaaggcagacatagagcaactcccatca
tacaggttcaaccccaacaaccaccagtctgagcaaacactgtgtgtggtgtgtatgtgc
gactttgagtctcgccagctcctaagggtcttgccctgtaatcacgagttccacgccaag
tgtgtagacaagtggcttaaggctaaccggacctgtcctatctgtcgagccgacgcctct
gaggtccagcgggattctgagtga
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