Scomber scombrus (Atlantic mackerel): 133988164
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Entry
133988164 CDS
T10651
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco02010
ABC transporters
ssco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
133988164
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133988164
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ssco02000
]
133988164
Transporters [BR:
ssco02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
133988164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
133988164
NCBI-ProteinID:
XP_062283705
LinkDB
All DBs
Position
2:12254151..12300968
Genome browser
AA seq
2271 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTIQLLIEIVWPLFIFFILISVRIHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRNPTPGESPGVVGNFNDSIISRLFIDAKKILLYTQNDK
SYEGYKGLLRALKKLQKNTASFKLKDFLRDNETLSHFLHHNASLPHHAMKQIVEADVNLE
KVLTKGFGFHLRDLCNTTPLEEFVHIADRNVSHLTQEIICKSSRDWLDKAQSHFLSNLDF
LKPIRKDVRSDPKVVQEVSAATDNLLGSLGALAVELSNMKSWKEMRKEILYLTANATGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDSEPLSTYDNTSTPYC
NNMMRSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMRPKIWNFMENSEEMDMVRTLLQNNASAAFFNSQLSETEWRVSDVSNFLSKISEDKR
PAGSAYTWRDVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMGLLNNQKFWAGI
VFPDIAHSNSTDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSY
LQDVIEQGIIRAVTGTKEKTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGILWLSWFISSLIPLLISAGLLVMLLKMGNLLPYSDP
GVVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGA
KIIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEDDSYNLTTSICLMLFDAVLY
GIMTWYIEAVFPGQYGIPRAWYFPFTRSYWCGEKENKNISTPLSKKGNADAVCIEEEPNH
IDPGVYIENLVKVYSHGNKLAVDGLSLRFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGKDIRTELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYACLKGLPEEKVKAEMEQ
IVNDVGLPHKRQSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKDY
DLTLQSCRNSASTVSYSKKTEKEDSISESSSDAGLGSEPESETTTIDVSLISNVIFKHVP
EARMVEDLGHELTYILPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVA
EDSGVDSVELSDGVVPTRIRRHHAFGDHQSCLKPFTEDDFDFNDSEGDPESRETDWLSGT
DGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF
GKYPSLALHPSMYGEQFSFISNDLPEDPHINKLLGALTDKPGFGTRCMEGEPIPDTPCTE
VEDEWSVPQVSQSMKDIFDNGNWSMENPSPLCECSCQGRKRMLPECPAGAGGLPPPQMKT
SDKDILQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARNSQLLSQRDEI
DDAITELRMRFRLERGTAADRFFRSLSSFVQGLDTKNNVKIWFNNKGWHSIGSFLNVMNN
GILRASLPADKDPSKFGITAHNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPAS
FVVFLIQERVNKAKHMQFISGVQPLLYWLANFVWDMCNYIVPATLVIIIFVCFQQDAYVS
STNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELF
GSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGK
NLFAMAIEGVIFFSITVLIQYHFFFKARSSTSHLKPIGEEDEDVARERQRILSGGGQSDI
LELRQLTKIYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAY
LAGKSVNKEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRK
LALAKYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNTILSII
KEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPD
LQPVMDFIERELPGSTLKEKHRNMLQYQLPSSLTSLARIFSLLSKNKEELSIEDYSVSQT
TLDQVFVNFAKDQSDEDHLKDVHLNKRDAVVVDISKMNSFLMDNKTRESCV
NT seq
6816 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctccactcaactgggtttactgctttggaagaacttcacctaccgacggaga
cagactatccagctgctgattgagattgtctggcccttgttcattttcttcatcctaatc
tcagtccgaatacattatccaccctacgagcaacatgaatgccatttccctaacaaggcc
atgccctcagcgggcaccctgccctgggtacaaggaatcatctgtaacgctaacaacccc
tgctttcgcaaccctacccctggagaaagtcctggggtggtgggaaacttcaacgattct
ataatctcccgtctgttcattgatgccaagaaaatcctgctctacactcagaatgataag
agctacgagggctacaaaggactgctgagggccctcaagaagctgcagaagaacactgct
agtttcaagctgaaagactttttaagagacaatgaaaccctctcacatttcctgcatcac
aacgcctcacttcctcatcacgcaatgaagcagatagtcgaggctgacgtcaatctggag
aaggtactgactaaaggtttcggcttccatcttagagacctctgtaataccacacccctg
gaagagtttgtccatatcgccgaccgcaacgtctcccatctgacacaagaaatcatctgc
aagtcctccagagattggctggacaaggcccagagccacttcctctcaaacttggacttc
ctcaaacctattcggaaggatgtgaggtcggaccccaaagttgttcaggaagtctcagct
gcaaccgacaatcttctggggagcctgggagcactggccgtggagctttccaatatgaag
agttggaaggaaatgcgtaaagagatcctgtatcttactgcaaatgccacaggctctcca
aaccaaatgtaccaagctgtatcacgtatcgtctgtggacacccagagggaggcggcctt
aaaatcaaatctcttaactggtatgaagacaacaactacaaggccctgttcggaaaccat
ggtaacgacagtgacagcgagcctctctccacttacgacaacacctcaactccctattgt
aacaacatgatgcggagcctggagtccagccccatttccaggatgatctggagagctctg
aaacctctgctcatgggaaagatcctgtatactccggatactccagcaacacagaggatc
atccatgaggtcaataagaccttccaggagctcggcgtgctgcgggaccttggtgggatg
tgggaggagatgaggcccaaaatttggaacttcatggagaatagcgaggaaatggacatg
gtcaggaccctgctccaaaataatgccagtgcagcattctttaactcccagctcagtgag
actgaatggcgggtgtcagatgtatcaaacttcctgtccaagatctcagaggacaaaaga
cctgcaggatcagcctatacctggagagatgtcttcaatgaaacggaccaggccatccag
acgatctcacgattcatggagtgtgtgaacctggacaagttggagccagtagctaatgag
gagcgattggtcaacaagtccatgggtcttcttaacaaccagaagttctgggcaggaatt
gtgtttcccgacatcgcccatagcaacagcactgacctgcctcccaatgtcaactacaaa
atccgcatggacattgataatgttgagaggactaacaagattaaagatggctattgggac
cctggccccagggcagacccctttgaggaccttcggtacatctggggtgggttttcctac
ctgcaggacgtgattgaacaaggaatcatcagagctgttactggcacaaaggaaaagaca
ggcatctacattcagcagatgccctatccctgttatgttgatgacattttcctgcgggtg
atgagtcgatcaatgcctctcttcatgactttggcatggatgtactcagtggccatcatc
atcaagggtgtggtgtacgagaaggaagcgcgactcaaagagaccatgaggatcatggga
ctgaataacggcatcctgtggctcagctggttcatcagcagtttaatccctctgctgatc
agcgctggcttattggtgatgctattgaagatgggaaatctgctgccttacagtgaccca
ggcgtggtgtttctttttctgggatccttcggcgtagtgaccatcatgcagtgttttctc
atcagcaccttgttctctcgtgccaacttggcagctgcctgcggtgggatcatctacttc
actctttacctgccttacgttctgtgtgttgcctggcaagactacgtgggctttggagca
aaaatcattgtgagtctgctgtctcctgtagcttttggttttggctgtgagtactttgcc
ctgtttgaggagcaaggagtgggaatccagtggtccaatctactggctagccctctggag
gatgacagctacaatctgaccacctctatctgcctcatgctgtttgatgccgttctctat
ggaataatgacatggtacatcgaagctgttttccctggtcagtatgggatccccagggct
tggtatttcccattcactaggtcatactggtgcggagagaaagaaaacaagaacatctca
actcccctgtcaaagaagggcaacgctgatgctgtgtgtattgaggaggagccaaaccac
attgatccaggtgtttacattgagaatctggtgaaggtctacagccatggaaacaagctg
gctgtggatggactgtccctgagattctatgaaggacagatcacctccttccttggccac
aatggagctggcaagaccacaactatgtcaatccttacaggattgttcccgcccacatct
ggtacagcctacatccttggcaaggacatccgcactgaactcagcaccatacggcagaat
ctgggtgtctgtccccagcacaatgtacttttcagcatgctgacagtggaggaacacatc
tggttctacgcctgtctgaagggactgcctgaggagaaggtaaaggctgagatggagcaa
attgtgaacgatgttggactgccgcataaaagacaatcacgcaccagcacactgtctgga
gggatgcagaggaagctctcagtagccctggcttttgttgggggctcaaaggttgtcatt
ttggatgaacccactgctggtgttgatccttacgctcgcaggggcatctgggacctgctg
ctcaaatacagacaaggccgtaccatcatcctgtccactcatcacatggatgaggcagac
atcctgggtgaccgcattgccatcatttcccatggcaaactgtgctgcgtaggctcctcg
ctcttcttgaagactcaactggggacaggctactacctgaccctggtcaagaaagactat
gacttgacacttcagtcctgcaggaattctgcaagcaccgtctcctacagcaagaaaaca
gagaaggaggacagtatatcagagagcagttcagatgcaggtcttggcagcgaaccagag
agtgaaaccaccacgattgatgtgtccctcatctccaatgtgattttcaagcatgtccca
gaggctcgcatggtggaggatctcgggcatgaactcacatatatcttaccctaccagtca
gctaaagacggagcctttgtagagctcttccatgagcttgacgatcgcctgaccgacctg
ggaatatcaagttatggaatatctgataccaccctggaggagattttcctgaaagtggct
gaggacagtggagtggattctgttgagctttcagatggagtcgtgccgacaaggattcgt
cgccatcatgcatttggagaccaccagagctgcctgaagcccttcacagaggatgacttt
gatttcaacgactctgaaggtgacccagaatcccgtgagactgactggctcagtggaaca
gatggtaaaggttcgtaccaggtcaaaggctggagtctgaagagacagcagtttgtggcg
ttactttggaaacgattcctctacgctcggcgctccaggaaaggcttctttgctcagatt
gttcttccagcagtgtttgtgtgcattgcccttgtgttcagcctgattgtgcctcccttt
ggaaagtaccccagtctggccctgcatccgagcatgtatggcgagcagttttccttcatc
agtaatgacttacctgaggacccgcacatcaacaaactactgggagctctgacagataaa
ccaggatttggaacacgctgcatggaaggagaacccatacctgacactccctgcacagaa
gtagaggatgagtggtcagtcccgcaagtatctcaaagtatgaaggacattttcgacaat
ggtaattggtctatggagaatccctctcccctgtgtgagtgcagctgccaagggcgcaaa
aggatgttgccagagtgtcctgctggtgctggaggacttccgccaccacagatgaagacc
agtgacaaagacattcttcaaaatttgactggcagaaacatctcagactatctggttaag
acctacgctcagattatcggcaagagcctgaagaacaagatttgggtcaacgagttcaga
tacggtggcttttcgctgggtgccaggaattctcagcttctgtctcaaagagacgaaatt
gatgatgcaattactgagctgcggatgcgcttccgtctggagagaggaaccgcagcagat
cgtttctttcgcagtctctccagtttcgtccaaggattggacaccaagaataacgtcaag
atctggttcaacaacaagggttggcacagcatcggctctttcctcaatgtgatgaacaat
ggcatcctgcgggcaagtctgccagccgacaaagacccctcaaagtttggcatcactgcc
cacaatcatccgctcaacctcaccaaggagcagctgtcacaagtcgctttgatgactacg
tcagtggatgtgctggtatccatctgcgtgatctttgccatgtcctttgtccctgccagt
tttgttgttttcctcattcaggagagagtgaacaaggccaaacacatgcagtttatcagc
ggagtgcagcccttactctactggctggccaactttgtctgggacatgtgtaactacatc
gttccagccacgctggtcatcattatttttgtgtgtttccaacaagacgcttacgtctcc
tccaccaatctgcctgtgctggccctgctgctgttgctttatggatggtctatcaccccg
ctgatgtacccagcctcatttttctttaagatccccagcacagcctacgtagttctgacc
agcgtcaacatactgataggaatcaatggcagtgtctccacattcgtcctggagctgttt
ggaagcaatgagatcggtggcatcaacgacatcctgaagaacgttttcctcatcttccct
cacttctgtctgggcagaggactgatcgatatggtgaagaatcaggcaatggcagatgct
ttggagagatttggtgaaaaccggttccgttctcctctggcctgggacatggtgggaaag
aacctctttgcaatggccattgagggcgtcatcttcttctccatcacagtcctcattcag
taccacttcttcttcaaggccaggtcatctaccagtcatctgaagcctataggagaagaa
gatgaggatgtggccagagagcgacagaggatccttagcggaggtggacaatctgacatc
ctggaacttagacagctcactaagatttacaagcggaaacagaagccggcagtggaccgg
ctgtgtgttggcatcccccccggcgagtgctttggcttgcttggtgtaaatggagctggg
aaaaccagcacctttaaaatgcttacaggagactctgtggtcaccagtggagaagcctac
ctggctggcaagagtgtaaataaagagatagatgaggtgcatcagaacatgggctactgt
ccacagtttgatgccattaacgacctgttgactggcagagagcaccttgagttttacgcc
atcctgagaggagtgcctgagaaggaagtctgtgaggtggcagagtggggcatccggaag
ctggccctagccaaatatgtagacaaatcagcaggcagctacagcggaggaaacatgagg
aaactgtccactgccatcgctctcataggaggaccacctgttgtttttctggatgaacct
acgacaggtatggaccctaaagcacgtcgtgccctgtggaataccatactgagcatcatc
aaagagggacgatctgtagtcctgacctctcacagcatggaggagtgtgaagcactttgc
accagaatggccatcatggtcaacggcaggttccgctgtctgggcagtgtgcaacacctt
aaaaacaggtttggtgatggctacaccatcatcctgcgggtggcggggccggacccagac
ctccaaccggtgatggacttcattgagcgggagctgccaggcagcacgctgaaggagaaa
caccgtaacatgctgcagtaccagctgccctcctcccttacctccctagcccgcatcttc
tccctgctctccaagaacaaggaggagctcagcatagaggactattccgtctctcagacc
actctagaccaagtgtttgtaaattttgccaaggaccaaagtgacgaggaccatttgaaa
gacgtccatctgaacaagcgagatgctgtggtagtggacatttcaaagatgaactctttc
ctcatggacaacaagaccagggagagctgcgtgtga
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integrated database retrieval system
