Scomber scombrus (Atlantic mackerel): 133988272
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Entry
133988272 CDS
T10651
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015
mRNA surveillance pathway
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133988272 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
133988272 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133988272 (pabpc1l)
03041 Spliceosome [BR:
ssco03041
]
133988272 (pabpc1l)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133988272 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
133988272 (pabpc1l)
Spliceosome [BR:
ssco03041
]
Complex C
Other components
Complex C specific factors
133988272 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RBD_DEAH11
RRM_occluded
RRM_3
YflT
UPF0524
Motif
Other DBs
NCBI-GeneID:
133988272
NCBI-ProteinID:
XP_062283850
LinkDB
All DBs
Position
10:20062695..20074552
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AA seq
625 aa
AA seq
DB search
MNSSGPSYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDDKGSKGYGFVHFETHEAANRAIETMNGMLLNDRKVFVGHFKSRKERE
VEFGTKAMKFTNVYIKNFGEDYSDDKLKEVFSVFGRTLSVRVMKDERGRSRGFGFVNYAN
HEDAQKAVDEMNGKDINGKMIYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDTIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRREERKAILTNKYMQRLATLRTMGSPIIDSYHQAAYYMSVPQPPTRSYYNH
TAVSNMRPVPCWTGQAPRPQGPYPNQYGSSVPRRGSTPIATVRQASTQAPRIISSSQKTN
NIGTQTGGGRTDVPGMTRSGQYKYSSAVRNPQQVITVPAPMTRLQAIPAPMMEPPVHVQG
HEPLTASMLAAAPLMDQKQLLGERLYPLIHTHHPNLAGKITGMLLEIDNSELLHMLESPE
SLHSKVDEAIAVLQAHQAKDCSPKK
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagcggaccatcctacccccttgcctctttgtatgtaggcgacctgcatcct
gatgttacggaggccatgctctaccagaagttctctcctgctgggcccatcatgtcgatc
cgtgtgtgccgtgacattatcactcgcagatctctgggatatgcctacataaacttccag
caaccagctgatgcggagtgtgccctggatacaatgaactatgatgttatcaagggtcgg
cctatcagaataatgtggtctcagcgtgacccaggacttaggaagtctggcgtgggtaac
atctttatcaagaacatggacgagtccattgacaacaaggccctgtatgataccttctca
gccttcgggaatattttgtcctgcaaggttgtttgtgatgacaaaggatccaaaggctat
ggctttgtccactttgagactcatgaggctgcaaaccgggccattgaaaccatgaatggg
atgctgctgaatgacaggaaagttttcgtcggccactttaagtcccgcaaggagcgagag
gtggaatttggcaccaaagctatgaagttcaccaacgtctacattaaaaactttggtgaa
gactactctgatgacaaactcaaagaagtcttttctgtatttgggaggactctgagtgtg
cgagtgatgaaggacgagaggggccggtcacgtggatttggcttcgtaaactacgctaac
catgaggatgctcagaaggcagtcgatgaaatgaacggaaaagatatcaatgggaaaatg
atctatgtgggacgagctcagaagcggctggagcgccagggagagctcaagcgtaagttt
gaccagatcaaacaggaccgcatccagcgctatcagggagtgaatctctacgtgaagaac
ttggacgacaccatagatgatgagagactgcggaaggagtttgccccctacggcactatc
acgagtgctaaggtcatgacagatggctcgcagagcaaaggctttggctttgtctgtttc
tcttcacccgaggaagcaacaaaagcagtcactgaaatgaatggaagaattgttgcaacc
aagccgctgtacgtggctctggctcagcggagggaggagcgtaaagcgatcctcaccaat
aagtacatgcagagactcgcaaccttgaggaccatgggaagtccgatcattgactcgtac
caccaggctgcatactacatgagtgtgccacagcctcccactcgctcttactacaaccac
actgctgtcagcaacatgaggccggtgccttgttggacgggacaagcacccagaccacag
ggcccgtacccaaaccagtatggcagttctgttcctcgacgtggctccactcccatcgct
acagtcagacaggcatccacccaggctccacgcatcataagttcatcacaaaagacaaat
aacatcgggactcagactggaggagggcgcactgacgtgcctggtatgaccagaagcggt
cagtacaagtactcatctgcagtgaggaacccgcagcaggtcatcactgtgcctgcaccc
atgacaagactacaggctattcctgcacctatgatggagccaccagtgcatgttcaaggc
catgaaccactcaccgcctccatgttggctgcagctccactcatggatcagaaacagctt
ctcggtgagcgattgtacccgctgatccacactcatcacccgaacctggctggaaaaatc
acaggaatgctgttagagatcgacaactctgagctgctacacatgctggagtctcctgaa
tcactgcactctaaggtggacgaagcgattgccgtcctgcaggctcaccaggcgaaggat
tgctctcccaaaaagtga
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