Scomber scombrus (Atlantic mackerel): 133988281
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Entry
133988281 CDS
T10651
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssco03041
]
133988281 (ddx20)
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133988281 (ddx20)
Spliceosome [BR:
ssco03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
133988281 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
DUF7155
Motif
Other DBs
NCBI-GeneID:
133988281
NCBI-ProteinID:
XP_062283866
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Position
10:complement(18214050..18224197)
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AA seq
796 aa
AA seq
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MAASMRKAAHDIETRNRTDDVRLSEGIDFNSLLLSQAVLEGLSSAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENTATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKIHLKKCHIAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMREPTFVRLNPKDMGLKG
LKQYYKLVQSHMLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADTLSSKGLP
AVCISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGLSLSALPSTIEPGLMDEPCDWDVCT
EASTPGPQSQLFSKTDKRRRAKVDIPAAAAAATAAAAAVAVSVTDQTVEHSAQRKPEKTH
PAARLGAHRDGNPRKVFPAKDALPVPTRKELQDALPKIPPLSSFKSCKSGFMTFEEAERD
FETFITTGLGRSVEFIREFRGGEDSHTVSVMVEDDGTQSVSQSCKRWKSEFSPPKSTSGS
SSSQSDMEERQQDDERLGQLDTTGGGEYSAVIKTEESHRSTVVKPKVEPTRTEPQTSYEP
KINHQRISATGGRAFSPRENHESVPSLTSSRQMAPARTSKNESRKTKEEIGKRSKKVSEK
TRREQRRERDEEEHDEEEESSNAETYWRDCYRAWTHYYASMSPFQEQGYQSYYSVAHNWM
AAYRMNAVYMDELMKY
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccatgaggaaagcggcgcacgacatagaaacgcgaaatcggaccgatgat
gtgcgtttatcggaggggatcgactttaactccctgctgctgtctcaggccgtgctggaa
ggactgtcctccgccggctttcagaaaccctccccgatccagctgaaggcgatcccgctg
ggccgctgtggactcgatttgattgtgcaggccaagtctggcacggggaaaacatgcgtg
ttctgcaccattgctttggactctctggtcctggagaatactgcaactcaggttcttgtg
ctggctccgacacgtgagatagcggtgcagatccattcagttgtgatggcaataggctgt
gccatggagggcctcgagtgccatgttttcatcggcggcaggcctgttagtcaggacaag
atccatctgaaaaagtgccatatagctgttggctcacctggtcgtatcaagcagcttatc
gaactgggcatgttgtccaccgccagcatcagactgtttgttctggatgaggccgacaag
ctgctggaggagggcagcttccaggaacagataaactggatcttctcctcgctgcctgtc
aataaacagatgcttgcgctctctgccacctacccagaatccctcgctcagcaccttacc
cgctacatgagagagcccacatttgtcagactcaatcccaaggacatgggcctcaaaggt
ctgaagcagtattacaagctggtgcagtctcatatgttacctcacaaggtgtttgaggag
aaggtgcagcacttgctggagctgttcagtaaaataccgttcaaccaagcactagtgttc
tctaacctgcacacaagggctcagcacctggcagacaccctgtcatccaaaggcttacct
gctgtctgcatctcaggtggtctgagtcaggaccagagactggaggccatgtcaaaactg
aagcagtatcaatgcagagtgctcatctccactgatctgacttccagaggtatagatgca
gagaaagtaaacttggtgattaacctggacgtgccgcaggactgggaaacctacatgcac
cgaattggacgggctggccgcttcggcactcaggggctcgctgtgacctactgttgccat
ggcgaagaggagaacaagatgatggccattgctcaaaagtgcggcctgagtttgtctgca
ttgccatccaccatagagcctgggttgatggatgagccttgtgactgggatgtctgcacc
gaggcgtcaactccaggccctcaatcccagctcttctccaagacagacaagaggagacgt
gccaaggtcgacattcctgctgctgctgctgctgctactgctgctgctgctgctgtcgct
gtctcagtcacggatcaaactgtggagcatagtgctcaaagaaagccggagaagacccat
ccagcagccagattgggagctcaccgtgacgggaatcctagaaaagtgttccctgcaaag
gacgctctcccagtgcccactcgaaaagagctgcaagacgctctgccaaagattcctccg
ctcagctcgttcaagagttgcaagtcagggtttatgactttcgaggaggctgagcgggac
ttcgagacgttcattaccaccggtttagggagatcagtggagttcatcagggagttcaga
ggtggagaggacagccacacagtgtctgtcatggttgaggatgacggaactcagagtgtc
tcacaaagctgtaaacggtggaaatctgagttttcacctccaaaatcaacttctggttct
tcaagctcccaatctgatatggaggagcgccaacaggatgatgagagactggggcaatta
gatacaactggaggaggtgaatacagcgcagtcattaagacagaagaaagtcatagatcc
actgttgtcaaaccaaaagtagagcccactagaactgagcctcaaacatcttatgaacca
aaaataaatcaccagaggatcagtgcaacaggtggcagagctttttctccacgtgaaaac
catgaatctgtgccaagtttgacgtcgagcaggcagatggctccagcacgaaccagcaaa
aacgaatccagaaagacgaaggaagagattggaaaacggagcaaaaaggtttctgagaag
acgaggagggagcagaggagggaaagggatgaagaagaacatgatgaggaagaggagtcg
tcgaatgctgaaacttactggagagactgctacagagcctggactcattactacgcctcc
atgtctccctttcaggagcagggttaccaaagctactacagtgtagctcacaactggatg
gcagcttatcgtatgaatgctgtttacatggatgaactcatgaaatactga
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