Scomber scombrus (Atlantic mackerel): 133988310
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Entry
133988310 CDS
T10651
Symbol
hnrnpa1b
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1b
KO
K12741
heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133988310 (hnrnpa1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133988310 (hnrnpa1b)
03041 Spliceosome [BR:
ssco03041
]
133988310 (hnrnpa1b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133988310 (hnrnpa1b)
mRNA cycle factors
Common to processing body (P body) and stress granule
133988310 (hnrnpa1b)
Spliceosome [BR:
ssco03041
]
Common components
Common spliceosomal components
hnRNP proteins
133988310 (hnrnpa1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
133988310
NCBI-ProteinID:
XP_062283907
LinkDB
All DBs
Position
10:16494297..16498367
Genome browser
AA seq
356 aa
AA seq
DB search
MSKDVPREPEQLRKLFIGGLSFETTDESLRAHFEQWGSLTDCVVMRDPNSKRSRGFGFVT
YSSVDEVDAAMSARPHKVDGRVVEPKRAVSREDSNRPGAHVTVKKIFVGGIKEDTDESHL
RDYFEQFGKIEVIDIMTDRNTGKKRGFAFVTFDDHDSVDRIVIQKYHTINSHNCEVRKAL
TRQEMQTAGMGMRGRSSGGRPYEYDRGFSQGGRGRYGDGPYNCNGGDGGGGGGGGSCGGN
GGGYGGGPGGPGGYNNGGNRGYNQGYNQGGGGGGYGGNGYDSNGYGNCGGGGGGGGGGGG
GGGSSNYNNMGHYDPQASNFGPMKNNFGGGGGGGRNFGGYGGGSNNGGGYGRPGRF
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagatgtcccacgcgagccggagcagctccgcaagctgttcattgggggtttg
agctttgagaccacagatgaaagcctgcgggctcactttgagcaatggggtagccttaca
gactgtgtggtcatgagggaccccaacagcaaaagatccaggggctttggctttgtgaca
tactcctcagtagatgaggttgatgctgccatgtctgcccgtccccataaggttgatgga
agagtggtggagcctaagcgagctgtctccagagaggactcaaaccggccaggtgcccat
gtaacagtgaaaaagatctttgttgggggcatcaaggaagatacagatgagtcacacctg
cgggattacttcgagcagttcggcaaaatagaggtcattgatattatgactgatcgtaat
actggcaagaagaggggctttgctttcgtaacctttgatgaccacgattcagttgacagg
attgtcattcagaaataccacacaatcaactctcacaactgtgaagtgaggaaggctctc
acaaggcaggaaatgcagactgcaggaatgggaatgagaggccgtagcagtggtggaagg
ccctatgaatatgacagaggcttcagtcaaggtggcaggggtagatatggagatggtcca
tacaattgcaatggaggagatggtggtggcggcggtggcggcggaagttgtggtggcaac
ggtggtggttatggaggtggtcctggtggccctggtggctataacaatggaggcaaccgg
ggttataaccagggatacaaccagggtggaggcggaggaggctatggaggaaacggttat
gacagcaacggttatggaaactgtggtggcgggggcggcggtggtggtggtggtggtggc
ggcggcggcagcagtaactacaacaacatgggccactacgacccccaggcctctaacttt
ggcccaatgaagaacaactttggaggtggcggaggtggtggcaggaactttggtggctat
ggaggtggctcaaacaatggtggtggatatggccgtccaggacgattttga
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