Scomber scombrus (Atlantic mackerel): 133988313
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Entry
133988313 CDS
T10651
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
133988313 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133988313 (scn8aa)
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133988313 (scn8aa)
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Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
FraC
HpsJ
GPHH
Motif
Other DBs
NCBI-GeneID:
133988313
NCBI-ProteinID:
XP_062283911
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Position
10:15017335..15055155
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AA seq
1974 aa
AA seq
DB search
MAAPLIPPGPDSFKKFTLESLAELELRITEEKNKKPPKQDSSYRDDDDENKPKPNSDLEA
GKSLPYIYGDPPRGMVAVPLEDLDPYYLNSQKTFIVLNKGKTIFRFSATPALYFISPFNL
VRRIAIKILIHSLFSMIIMATILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKICAR
GFCIDGFTFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVFWPINTTESYLANGSKGF
DWDEYIMNDTNFYFLPGQLDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAF
LALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TMEEAAQKEEEFKAMLEQLKRQQEDAQTAAMATSAGTVSEDAVEDDGGGHLSCSSSEMSK
LSSKSAKERRNRKKKWRQKEQEKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIMN
QSLLSIPGSPFLSRHNSKSSIFSFKGRNKDVGSENEFADDEHSTVEECEERRGSLFSPYR
RSSYSGYHGKRNSTVDCNGVVSLIGPGPGGRLLPEVKIDKAATDDSVRKSMSRPPTTEVE
VKKKLSGSLMVSVDQLNTSFGRKERANSVMSVITNTLVEELEESQRSCPPCWYKFANTFL
IWECSPKWVKIKEIMNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPDFEDMLSVGNLV
FTGIFAGEMLFKLVAMDPYYYFQEAWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRV
FKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKIAAD
CELPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQGMCLIVFMMVMVIGNLVVLNL
FLALLLSSFSADNLAATDDDGEPNNLQISVKRIKIGIAWFKAKMRIVVASLLKKPPMEDE
QKPLDDMYDKKLNCIANHTGVDINRDLDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNP
NLTVCVPIAVGESDFENLNTEDFSSESENENSKELDDTSSSEGSTIDIKPDVVEEVVVET
VEEYMEPDACWTDACVAKYKCCDVPITVGWGKPWWFLRKTCYLIVEHNWFETLIIFMILL
SSGALAFEDVYIEQRKTIRIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFF
IVDVSIVSLVANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNV
LLVCLIFWLIFSIMGVNLFAGKYYYCFNETSEEYFSVDVVNNKTQCEALMHQNFTEVRWK
NVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSREVEDQPNYEVNIYMYIYFVVFIIF
GSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNK
IQGMVFDFVTQQVFDISIMILICLNMVTMMVETDDQSDETEHVLYWVNFIFIVVFTTEFL
LKLFALRHYYFTNGWNIFDVVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRL
IKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDLYNFET
FGNSMIILFMITTSAGWDGLLLPILNYPPDCDPNLENPGTSVKGDCGNPSVGIFFFVMYI
IISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPTASQFITFAKLSD
FADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRQQME
ERFVAANPSKVSYEPITTTLRRKQEDVSARTIQNAYRSHLIRRGIIFKRRTFTNNKLENG
GTNQEKKESTPSTASLPSYDSVTKPDKEKQDENKEEWARKEKDKNQKDEWESKC
NT seq
5925 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttataccgccaggacctgatagcttcaagaagtttactttggaatct
ttggcggagcttgagctgcgcatcacagaggagaagaacaagaagccacccaagcaggat
agcagctaccgcgatgatgatgacgagaacaagcccaagcccaacagcgacctggaggct
gggaagagtctgccctacatatacggggacccccctcgtggaatggtggcggtaccattg
gaggacctggacccatactacctgaattctcagaaaacatttatagtgctgaataaaggg
aagacaatcttccgttttagtgccacacctgccttgtacttcataagtccttttaatctg
gttaggcgaatagctattaaaattttgatacattctcttttcagcatgatcattatggct
actattttgaccaactgtatattcatgacctttagtgatcctcctgagtggtcaaagcaa
gtagagtacacattcacaggaatttatacatttgagtctcttgtaaaaatctgcgctcga
ggattctgtatagacgggtttactttccttagagatccatggaactggctggatttcatg
gtcatttccatggcatatgtaacagagtttgtggacctgggcaatgtatctgcgctgaga
acattcagagttctccgagcattgaaaactatctctgtcattccaggcctgaagaccatt
gtgggtgccctgatccagtctgtgaagaagctctcagatgtgatgatcctgaccgtcttc
tgcctgagtgtctttgccctcatcggtctccagctcttcatgggcaatctgcgccacaag
tgtgtgttctggccaatcaacaccaccgagagctacctggccaatggcagcaagggcttc
gactgggacgagtacatcatgaacgacaccaatttctacttcctacctggccaactggat
gcccttctctgtgggaacagctcagactcaggccgctgcccggagggttacacatgcatg
aaagctgggaggaatccaaactacggctacaccagctttgacagcttcggctgggccttc
ctggctctcttccgactcatgacacaggacttctgggaaaacctctacatgctgacactg
agggcagcagggaagacctacatgatatttttcgtgttggtgatttttgtgggttcgttc
tacttggtgaatctgatcctggctgtggtagccatggcctatgaggagcagaaccaggcc
accatggaagaggctgcgcagaaggaggaggaatttaaggccatgctggagcagctgaag
agacagcaggaagacgctcagactgctgccatggcaacctctgcgggcacagtgtcagag
gatgcagtagaagacgatggaggagggcacctgtcatgcagttcctctgagatgtcgaag
ctcagctccaagagtgccaaagagcggcgaaatcgtaagaagaagtggcggcagaaagag
caggaaaaggaaaaaggagacagtgagaagtttgtcaagtctgagtcagatgacggcagc
aagaggagccgcttccgtttccctgataaccgcctgggtcgaaagtcttccattatgaac
cagtcccttctcagtatacccggctcgcctttcctgtcccgccacaacagcaagagcagc
atctttagtttcaaaggccgcaataaggacgtgggctcagagaacgaatttgcagatgat
gagcacagcactgtggaggagtgcgaggagcgtcggggctccctgttcagcccgtaccgg
cggagcagctacagcggctaccacgggaagaggaacagcacggtggattgcaatggcgtg
gtgtcgctcatcggccctggtcccggtggacgccttctgcctgaggtgaaaatagataag
gcagctactgacgacagtgtaaggaagtcaatgagtagacctccaaccactgaggttgag
gtgaagaagaagctgtcgggctccctgatggtgtctgtggaccagctcaatacctccttt
gggcggaaagagcgggccaacagtgtcatgagcgtcattaccaacacactagtggaggaa
ctggaggagtctcagcgaagttgtcccccatgctggtataagtttgctaacacattcctg
atctgggagtgctcccccaagtgggtgaagattaaggagattatgaacctgatagtcatg
gaccccttcgtggacttagccatcaccatctgtatcgttctcaacaccctcttcatggcc
atggagcactaccccatgacccctgactttgaggatatgctatctgtaggcaatctggtc
ttcaccggtatttttgcaggggagatgcttttcaaactggtggctatggatccctactac
tacttccaggaggcctggaactgtttcgatggtttcattgtgacgctgagtttagtggag
ctggctttggctgatgtcgagggcctgtctgtgctgcggtcattccgattgctgagagtg
tttaaactggccaagtcatggcccaccctcaacatgctgatcaagatcataggtaactca
gtgggagccttggggaacctgactctggtgctggcaatcatcgtcttcatctttgctgtg
gtaggcatgcagttgtttggaaagagctacaaagactgtgtgtgtaagatcgctgctgac
tgtgagctaccccgctggcacatgaacgacttcttccattccttcctgattgtcttccgg
gtgctgtgtggtgagtggatcgaaaccatgtgggactgcatggaagtggcgggccagggc
atgtgcctcatcgtcttcatgatggtcatggtgattggtaatctggtggtgttgaacctg
tttcttgccttgctactgagctcattcagcgctgacaacttggctgcaacagatgatgac
ggtgagcccaacaacctacagatttctgtcaagcgtataaagataggcattgcgtggttt
aaagcgaagatgcggatagtggtggccagtctgctgaagaaaccaccaatggaggatgaa
cagaagcctttggatgacatgtatgacaagaagctgaactgcattgctaaccacactggg
gtggacatcaaccgtgacctggactacgccaagaatggtaatggcaccaccagcggtatt
ggcagcagtgtgggcaagtatatgattgatgaggaccacatgtcgttcatccacaacccg
aacctgaccgtctgcgtgcccatagctgtgggagagtctgactttgagaacctcaacacg
gaagacttcagcagcgagtctgaaaatgagaacagcaaagagctggatgacaccagttca
tcagaaggcagcaccattgacatcaaaccagatgtggtggaggaggtggtggtggagacg
gtggaggaatacatggagccagacgcgtgttggacagatgcttgtgtggccaagtacaag
tgctgtgacgttcccatcacagtgggctgggggaagccctggtggttcttgagaaaaacc
tgctatctgattgtggagcacaactggtttgagaccctgatcatcttcatgatcctcctc
agtagcggtgccctggcatttgaggatgtgtacattgagcaaaggaagaccattcggatc
attttggaatacgctgacagggttttcacctacatcttcatcctggagatgttgctgaaa
tgggtcgcctatggttttgtcaagtacttcaccaatgcctggtgttggctggacttcttc
attgtggatgtgtctatagtcagccttgtagctaatgcgctgggctactccgatctaggg
cccattaaatcactcaggacactaagggccttgagacccctcagagccttgtcacgtttt
gaagggatgagggtggtagtcaacgccttggtgggtgccatcccttccattatgaatgtg
ttgctggtttgcctcatcttttggctgattttcagtataatgggtgtcaacctgtttgcg
ggcaagtactactactgtttcaatgagacatcagaggaatacttttccgttgatgtggtc
aacaacaagacccagtgtgaggccctcatgcatcaaaactttaccgaagtcaggtggaag
aatgtcaagatcaactttgacaatgtgggcgccggctacctggctttactgcaagtggcc
acattcaaaggctggatggacattatgtatgcagctgtggattctagagaggtggaagac
cagcccaactatgaagtcaacatctacatgtacatctactttgttgttttcatcatattc
ggttccttcttcaccctgaacctcttcattggtgtgatcattgacaacttcaaccagcag
aagaaaaagttcggaggccaagatatcttcatgacggaggaacagaagaagtactacaat
gccatgaaaaagctggggtccaaaaagccacaaaaacctattcctcgaccacagaacaag
atccagggaatggtgttcgactttgtaacacagcaagtctttgatatctccatcatgatt
cttatctgcctcaacatggtcaccatgatggtggaaacagacgatcagtctgatgaaaca
gaacatgtcctctactgggtcaactttatctttattgtagtcttcaccacggagttctta
ctgaagctttttgcccttcgccactattacttcaccaatggctggaatatctttgacgtt
gtggtggtcatcctttcaattgtcggtatgttcctggctgaccttattgagaaatacttt
gtatcgccaaccttgtttagggtgatcaggttggctcgtattggccgtatcctccgtctg
atcaaaggagctaagggcatccggacgttactctttgctctgatgatgtcattgccagcc
ctgttcaacattggtctactgctcttcctggtcatgttcatcttctcgatcttcggcatg
tctaacttcggctacgtaaaacatggagcgggaattgacgacttgtacaacttcgagacc
tttggtaacagcatgatcatcctgttcatgatcaccacgtctgctggctgggatggcttg
ctgctgccaatcctcaactacccaccagactgtgatcccaacttggaaaacccaggcacc
tccgtgaagggcgactgtggtaacccgtcggtgggaatcttcttttttgtcatgtatatc
atcatttcttttctgattgtggtcaatatgtacattgccatcattctggagaacttcagt
gtggccacagaggaaagtgctgatccactcagtgaggacgactttgagaccttctacgag
atctgggagaagtttgaccctaccgcctctcaattcattacttttgccaagctgtctgac
tttgccgacgctttagagcacccacttcgtgtgccaaagcccaacactatagaactaatt
gccatggacttgcccatggtgagtggcgatcgcattcactgcctagacatcctgtttgcc
ttcacaaagcgtgtgctgggtgacagtggtgagttggacatgctgaggcagcagatggag
gagcgttttgtggcagcaaacccatccaaggtctcatatgaacccatcaccaccaccctc
cgccgcaaacaggaagatgtctccgccagaactatccagaacgcctaccgttctcacctc
atcaggcgtggcatcatcttcaagcgtcgcactttcaccaacaataagcttgagaatgga
gggaccaaccaagaaaagaaggagagcacgccatccactgcctctctcccctcttatgac
agcgtgaccaaacctgacaaggagaagcaagatgagaacaaagaggagtgggccaggaaa
gagaaggacaaaaaccaaaaagatgagtgggaatccaagtgttag
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