Scomber scombrus (Atlantic mackerel): 133988400
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Entry
133988400 CDS
T10651
Symbol
itga5
Name
(RefSeq) integrin alpha-5 isoform X1
KO
K06484
integrin alpha 5
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03266
Virion - Herpesvirus
ssco04145
Phagocytosis
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04517
IgSF CAM signaling
ssco04518
Integrin signaling
ssco04810
Regulation of actin cytoskeleton
ssco04820
Cytoskeleton in muscle cells
ssco05100
Bacterial invasion of epithelial cells
ssco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
133988400 (itga5)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133988400 (itga5)
04517 IgSF CAM signaling
133988400 (itga5)
04518 Integrin signaling
133988400 (itga5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
133988400 (itga5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
133988400 (itga5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133988400 (itga5)
04810 Regulation of actin cytoskeleton
133988400 (itga5)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133988400 (itga5)
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
133988400 (itga5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133988400 (itga5)
04515 Cell adhesion molecules [BR:
ssco04515
]
133988400 (itga5)
04090 CD molecules [BR:
ssco04090
]
133988400 (itga5)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133988400 (itga5)
Cell adhesion molecules [BR:
ssco04515
]
Integrins
Integrin alpha subunits
133988400 (itga5)
CD molecules [BR:
ssco04090
]
Proteins
133988400 (itga5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
ITGAX-like_Ig_3
Integrin_alpha
Membra_charge
Motif
Other DBs
NCBI-GeneID:
133988400
NCBI-ProteinID:
XP_062284044
LinkDB
All DBs
Position
10:25642515..25679136
Genome browser
AA seq
1059 aa
AA seq
DB search
MGLERFRAKTPGTVALLARSLLCILGLLLTFSQPVCEAFNLDVENPAVYSGPNGSYFGYA
VDFYLADSASASVVIGAPKANTNQVNVKEGGSVFYCPWSLSQSDCHTIEFDTEGDRTALV
NDKKEQIDFKSHQWFGATVRSHGDAILACAPLYSWRTEKDTAYSDPTGTCYLSVQNFTKF
VEYAPCRTELSEAVGQGYCQGGFSADFTTDGKVVLGGPGSYFWQGQVISAAKEEIIKAYN
PDYPIQAVGGQIQTKQVTAKHDDSYQGYSVAVGEFSGDQVEDFVAGVPKGLMLYGLVSIL
NGTDLKAMINYTGEQMGSYYGYAVATTDINSDGMIDLLVGAPMFMVRGSDGRLEEMGRVY
VYLQHSPLNLELILPHLTGTQVFGRFGSTIAPLGDLNQDGFNDVAISCPFGGEEQQGLVY
IYNGYSKGLGEKPSQIITGQWAAGSIPASFGFGLRGAKDLDMNGYPDLIVGAFGVDKAVL
YRSRPIVNTIATLTVYPTMINPEEKNCIITNGNSSIPVSCVNLSFCISADGKHLPSILDF
QVEVQLDSHKPKQKGAVKRALFLDSQLPLLQRSVRVRRGERICNQTTIYLRDEKEFRDKL
SSIYVALNYSLDPRAAADSHGLRPILNYHATSVIEQKAQILLDCGEDNICVPDLKLAVHG
DRKEVYLGDDNSLTLTFNARNEGEGGAYESELYVVLPPEADYSGIARNNESLTQLTCSYD
TENQTRYLICDLGNPMKSGTNLWAGLRFTVPRLKDTHKTVQFELQIRSKNENNSHSEVAP
YKLEVVVQADVILQGVSRPDKVFFPPVNWKVTKNLGVEQDVGPAVEHIYELVNNGPSRIS
QTLLELRCPLSIQSHNLLYPLEFSTEGPINCTSDKNMNHLHLKLQQTSTEPPLLALKAHE
HRIERRDVHKNQLSHLTNLSCSNAECWTVKCNVGLLEKGTTAILKVRSRVWAETFIERAY
KQHVLECLARYRVDKMPYAILPKHSPSGHKKVVTPVVWHKPDIENSVPLWIIILAILAGL
LLLALLIYVLYKFGFFKRSLPYGTAMEKAELKPQAASEA
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgggcttggaacgatttcgcgcaaagacgccggggacagtagcccttctcgcccgctca
ctcctttgtattctcgggctattactcactttttcccagcctgtctgcgaggcattcaac
ttggacgtggagaacccagctgtttacagcggacctaatgggagctacttcggatatgca
gttgacttttatttggctgattctgccagtgcaagtgtggtgataggagctcccaaggcc
aacacaaaccaggtcaatgttaaagaaggaggttctgtcttctactgtccatggagcctc
agccaatcagattgtcacacaattgagtttgatactgaaggggatcgcactgccttggtc
aacgacaaaaaagaacagattgatttcaagtcccaccaatggttcggcgccactgtgcga
tctcatggtgatgcaattctggcttgtgcccctctctactcctggcgcactgaaaaggac
accgcctattctgaccctacaggaacctgctacctctcagttcagaatttcaccaaattt
gtggagtacgcaccttgccgcacagagctcagtgaagcagtaggacaaggctactgtcag
ggaggatttagtgctgacttcaccacggatggcaaagtggtgttgggagggccaggcagc
tacttttggcaaggtcaggtgatctctgcagctaaggaggagattatcaaagcgtacaac
ccagactatcctatacaggctgtgggtggccagatccagacgaaacaggtcacggctaaa
catgatgacagctatcaggggtactctgttgctgttggggaattcagtggtgatcaagtg
gaagattttgtggcgggtgttccaaaaggactcatgctttacggtttggtgtctattctg
aatggtacagatctgaaggccatgattaactacactggcgagcagatgggatcatattat
ggctatgcagtggcgacgactgacatcaatagtgatgggatgatcgacctgctggtggga
gctcccatgttcatggtccggggctctgatggccgtctggaagagatgggccgggtttat
gtttacttgcagcacagccctctaaacctggagctcatcctacctcaccttacaggcact
caggtgtttgggagatttggcagcaccattgcaccattgggagatctgaaccaggatggg
ttcaatgatgtggctatcagctgtccatttggaggggaggagcagcagggactggtttac
atctataatggatactcaaaaggactcggggaaaagccatctcagattatcactggccag
tgggctgctgggtctatacctgctagctttggatttggcctcagaggtgctaaggacctg
gacatgaatggatacccagatctcattgttggcgcctttggtgttgataaggcagtcctc
tatagatcccgcccaatagtaaacaccattgcgaccctgacagtttaccccaccatgatc
aaccctgaagagaaaaactgcatcatcactaatggaaactccagcattcctgtttcctgt
gtcaacctgagtttctgtatatccgctgatgggaagcatctaccaagcatcttagatttc
caggtggaggtgcagctcgatagtcataagcccaagcagaaaggtgcagtgaagagggct
ctgttcttggattcccagctgcccttgctccagcggagtgtgagggtgcgccgtggcgag
cgcatatgcaaccagacaacgatctacctaagagatgagaaagaattcagagacaaactc
tcctccatttacgtggccttgaactacagcttggatcccagagctgcagctgactcccac
ggcctgcggcctatcctcaactatcacgccaccagcgtcattgaacagaaggctcagatt
ctgttggactgtggcgaggacaacatctgcgttcctgacttgaagctggcagtccatggg
gacaggaaggaagtctacctgggtgatgacaactcgctgaccttgactttcaacgccagg
aatgagggtgagggaggggcgtacgagtcagagctgtacgtggtgctgccccctgaagct
gattacagcggtattgcccgcaataatgagagcctgacccagctgacctgcagctatgat
actgagaaccagaccagatacctcatctgtgatttgggaaacccgatgaagtctggtact
aatctttgggcaggtctgcgcttcacagtgccacgattgaaggacacgcacaaaactgtt
cagtttgagctgcagattcgcagtaaaaatgagaataattcccacagtgaggttgcgcct
tacaagctggaggttgttgttcaggctgacgtcattctacaaggtgtgtctcgaccagat
aaggtcttcttcccgccggtcaactggaaggttaccaaaaacctcggtgtggagcaagac
gtcgggcctgccgtggaacacatctatgagctggtgaataacgggcccagccggatcagc
caaacactgcttgagctgcgctgccccctcagtatccagagccacaatctcctttatcca
ctggagttctccacagaaggccccatcaactgcacctctgacaaaaacatgaaccacctg
cacctaaaactccagcaaacatccacagaaccacctctcctggcactaaaggcccatgag
caccgtatcgagaggagggacgtccacaagaatcaactctctcatttgactaacctgtcc
tgctctaatgctgagtgctggacggtcaagtgcaatgtgggtcttctggagaaggggact
actgctatcctgaaagtgcgctcccgcgtttgggctgagaccttcattgagagagcttat
aagcagcatgtgctggagtgcctggccagataccgtgtggacaaaatgccctacgccatc
cttcccaaacattctcccagtggacacaagaaggtggtgaccccagtggtgtggcacaag
ccagatattgagaactcagttcctctgtggatcatcatcttggccattctggctggttta
ctccttctggctctactcatctatgtcctgtacaagtttggattctttaaacgatcttta
ccttacggcactgccatggagaaagcagaactcaaaccacaggctgcttctgaggcttag
DBGET
integrated database retrieval system
