Scomber scombrus (Atlantic mackerel): 133988603
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Entry
133988603 CDS
T10651
Symbol
htt
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin
KO
K04533
huntingtin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133988603 (htt)
04131 Membrane trafficking [BR:
ssco04131
]
133988603 (htt)
03029 Mitochondrial biogenesis [BR:
ssco03029
]
133988603 (htt)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133988603 (htt)
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
133988603 (htt)
Mitochondrial biogenesis [BR:
ssco03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
133988603 (htt)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
133988603
NCBI-ProteinID:
XP_062284063
LinkDB
All DBs
Position
2:complement(8514848..8545060)
Genome browser
AA seq
3142 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQRQKKEQATTKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLTRITKRQEESVQETLAAAMPKI
MTALGHFANDGEIKVLLKSFVANMKSSSPTIRRTAASSAVSVCQHSRRTSYFYTWLLNVL
LGLVIPVDEEHPSHLILGVLLTLRYLMPLLQQQVNTTSLKGSFGVMRKEADVQPSPEQLL
QVYELTLHYTQHWDHNVVTAALELLQQIFRTPPPHLLHMLITASSIAHATVFRQDADSRA
RSGSILEFIGKMLSGEEDGLEDDPERTEVPTGAFTASVVGADGSSTAQVDIITEQPRSSQ
HTLQPGDSVDLSASPEQGGGGTSASDTPESPNDNEEEMLSQSSSGGANITPETADYTTPE
NATPEGGPLGESGTLLAANDRSLPPSDSSQTTTEGPDSAVTPSDVAELVLDGSESQYSGM
QIGTLQDEEDEGTAPSSQEEPTEPFLQSALALSKPHLFEGRGHNRQGSDSSVDRFIPKDE
PAEPEPENKPSRIKGPIGHYTDQGVEPLVHCVRLLAASFLLTGQKNGLTPDKEVRVSVKA
LAVSCIGAASALHPEAFFNSLYLEPLDGIPVEEQQFISDVLGLSDHGDPQIRGATAILCG
AIIQAALTKNRYNIHTWLASVQSATGNPVSLVDLVPLLRKTLKDESSVTCKMACSAVRHC
IMTVCSSTLSELGLQLVIDLLALRDSSYWLVRTELLETLAEMDFRLMNFLERKTETLHKG
DHHYTGRLRLQERVINDVVVFLLGDDDPRVRHIAASAVSRLVPRLFYDCDQGQVDPIVAI
ARDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLSNTVSDVTMENNLSRVVTAVSHAF
TSSTSRALTFGCCEALCLLASNFPVCNWNTGWHCGYVSSNSSFASRSSLNRSRGRALSIS
QPSNASASSNTSSSTPDTERRTLTVGMANMVLSLLSSAWFPLDLSAHQDALMLSGNLLAA
VAPKCMRNPWAGEEEGSSGSTNPSGGPSKLEEPWAALSERSLVAMLEQLFSHLLKILNIC
AHVLDDTPPGPAAKVTFPSLTNTPSLSPIRRKGKEKDVAEPSAAPMSPKKSNEVNTGRPA
DGTGSAAVNKSTTLGSFYHLPPYLKLYDVLKATHANFKVTLDLHTSQEKFGSFLRATLDV
LSQLLELATLHDISKCVEEILGYLKSCFSREPTMATVCVQQLLKTLFGTNLASQYEGVLS
GPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEQDTSGWFDV
MQKASTQLRSNIANATRRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVALQRQVLDLLAQ
LVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPNIFFFLVLLSYERYHSKQI
ISIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELDTQKEVVVSM
LLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMIAKQQMHLDSPEALGVL
NTLFESVAPSSLRPVDMLLKSMFTTPASMASVATVQLWVSGILAVLRVLVSQSTEDIVLS
RVHELSLSPHLLSCHTIRRLHQQNPSPNDPSAADMLVNQESNGEAQKVLPEETFARFLLQ
LVGVLLDDISSRQVKVDITEQQHTFYCQQLGTLLMCLIHVFKSGMFRRITAAASRLLKGE
GGSGQTGSEAGLFYPLEGLNSMVQCLITTHPSLVLLWCQVLLIIDYTNYSWWAAVHQTPR
RQSLSCTKLLSPHSSGEGEEDKPESQLSMVNREIVHRGALILFCDYVCQNLHDSEHLTWL
IVNHVRDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLTTPTMLKKTLQCLEG
IHLSQSGSLLMLYVDKLLSTPFRVLARMVDTLACRRVEMLLAETLQNSIAQLPVEELDRI
QEYLQTSGLAQRHQRFYSLLDRFRATVADTSSPTPPVTSHPLDGDPPPAPEQVNADKEWY
VALVKSQCCLRGDVSLLETTELLTKLPPADLLNVMSCKEFNLSLLCPCLSMGVQRLARGQ
GSLLLETALQVTLEQLAGVTQSLPAPHQSFLPPSQPQPYWDQLAAVYDKPGFYPRVLSLC
RALSQYLLSVSQLPSSLHIPSDKEHLITTFTCTATEVLVWRLLQDHLPLSVDLQWALSCL
CLALQKPCVWNKLSTPEYTTHTCSLIYCLRLIMVAVAVSPGDQLLHPEKKKTKAERDAED
DEVDSPHAGHMCEWQACEIMAELVEGLQSILSLGHHRNSAIPAFLTPTLRNIVISLSRLP
LVNSFTRVPPLVWKLGWSPQPGGEFGTTLPEIPVDFLQEKDVFREFLYRINTLGWSSRTQ
FEETWATLLGVLVTQPITMDQEEETQQEEDLERTQLNVLAVQAITSLVLSAMTLPTAGNP
AVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVHTHHPYHAWDPVPS
LSAASAGTLISHEKLLLQINTEREMGNMDYKLGQVSIHSVWLGNNITPLREEEWGEDEED
EADTPAPTSPPMSPINSRKHRAGVDIHSCSQFLLELYSQWLIPGSPNNRKTPTILVSEVV
RSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLVPAICKAAAVLGMDKAIAE
PVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDDTAKQLIPTISEYLLSNLRAIAHCV
NLHNQQHVLVMCAVAFYMMENYPLDVGTEFMAGIIQLCGVMVSASEDSTPSVIYHCVLRG
LERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMYTGKEKASPASRPTH
SDPQAPDSESIIVAMERVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNKVIGE
FLSNQQPYPQFMATVVYKVFQTLHATGQSSMVRDWVLLSLSNFTQRTPVAMAMWSLSCFF
VSASTSQWISALLPHVISRMGSSEVVDVNLFCLVAMDFYRHQIDEELDRRAFQSVFETVA
SPGSPYYQLLGCLKCIHQDTSL
NT seq
9429 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactcatgaaggcctttgagtctttgaagtcattccagcagcag
cagggaccaccaaccgccgaggagcttgtccagaggcagaaaaaggaacaggctaccaca
aagaaggacagggtgacacattgcctgacgatctgtgaaaacattgtggctcagtctctg
agaacctctccagagtttcagaaactgctgggcatcgccatggagatgttcctgctctgc
agtgacgacagtgagtcagacgtccggatggtagccgacgagtgcctcaacaaaatcatc
aaagcactgatggattccaacctgcctagactgcaactggagctgtacaaagaaattaaa
aagaacggtgcctctcggagtctgagggcagctttgtggaggtttgctgagctggcccac
ctcatcagaccacagaaatgcaggccctacctggtcaacctgttgccgtgcctcaccaga
atcaccaagcggcaggaggagagcgtgcaggagacgctggctgcagcgatgcctaagatc
atgacagccttgggacactttgctaatgacggcgagatcaaggtgttgttgaagtcattt
gtggccaacatgaagtccagttcccccaccatcagacggacggcagccagctcggccgtc
agtgtgtgccaacactccagacgcaccagctacttctacacctggcttcttaatgtgctg
ctgggtctggtgattccagtggacgaggagcaccccagccatctgatcctgggggtgctg
ttaaccctccgctacctgatgcctctgctgcagcagcaggtcaacaccaccagcctcaaa
ggaagcttcggagtgatgaggaaggaagctgacgtacagccgtcacctgaacagctgcta
caggtgtacgagctgaccctacactacacacagcactgggatcacaatgtggtgacagca
gctctggagctcctgcagcagattttcagaactcccccgccgcatctcctgcacatgctt
atcaccgccagcagcattgcacacgccaccgtgtttcggcaggacgcagatagtcgcgcg
cgatccggcagcatcctcgagttcatcggtaaaatgctttctggagaggaggatgggtta
gaggatgaccctgagaggactgaggtccccactggtgccttcacagcatcggtcgtcggc
gcggacggctcctccacagcccaggtggacatcatcactgagcagccgcgatcctcccaa
cacaccctgcagcccggcgactcggtggacctgagcgcctccccagagcagggcggaggc
gggacttctgcgtcagacactcccgaatctcccaatgacaacgaggaggaaatgctgagt
cagagctccagtggcggggccaacatcactccagagacagctgactacaccacgcctgag
aacgccacgccggaaggagggcctttaggagagagcgggacactgctcgccgctaacgat
cgctcgctcccgcccagtgactcctcccagaccaccacagaggggccggactcagccgtc
actccctcggatgtagcagagctggtgctggacggcagtgagagtcagtactctgggatg
cagattggaacactacaggatgaagaagatgaaggaacagcaccttcctcccaagaagaa
cccacagaaccattcttacagtcggcactggctctgagcaaacctcatctcttcgaaggt
cgaggtcacaaccggcagggttcagacagcagtgtggaccgcttcataccaaaggatgaa
cccgctgaacctgaaccggaaaacaagccatcacgtataaagggtccaattggacactat
acagaccagggggtggagccactggtgcactgcgtacggcttcttgctgcttccttcctg
ctgactggacagaagaatggtctgaccccggacaaggaggtgcgagtgagtgtgaaagcc
ctggcggtcagctgtattggtgcagccagtgcattgcatcctgaagccttctttaattcc
ctctacctggagccgctggatggtattccagtagaagagcagcagtttatcagtgatgtg
ctgggcctcagcgatcacggggacccgcagatcagaggggctacagccatcctctgtgga
gccatcatacaggctgcactcaccaaaaaccgttacaacatacacacctggctggccagt
gtgcagagtgcaacaggtaaccctgtgtccctggtggatttggtgcctttgctccgaaaa
actctgaaagatgagtcttccgtcacctgcaagatggcctgctctgcagtcaggcactgc
atcatgactgtgtgcagcagcactctgagtgagctgggcctccagttggtgatagacctg
ctggctctgagggactcatcctattggctcgttcgcactgagctcttggagaccctggct
gagatggacttccggttaatgaatttcctggagagaaaaactgagactttgcacaaagga
gatcatcactacactgggcgactgcggctacaggagagggttataaatgatgtcgtcgtc
ttcctgctgggagacgatgatcccagagtacggcacatcgcagcctctgctgtcagcagg
ctagttcccaggttgttctatgactgcgatcagggccaggttgacccaatagtggccatc
gcccgcgaccagagttcagtctacctgcagctcctgatgcatgagacacaaccgccctcc
cagttcacagtcagcacaatcacaaggacgtatcgaggctacaacctgtccaacactgtg
tctgatgtcacaatggagaacaacttgtctcgagtcgtcaccgccgtctcccatgctttc
acctcctctacctccagagctctgacttttggctgctgcgaggcgttgtgcctcctggct
tcaaattttccagtgtgcaactggaacacaggctggcactgcggctatgttagctctaat
agcagctttgcatctcgctctagtctgaaccgcagcagaggcagggccctcagtatttca
cagcccagcaatgcttcagcttcttcgaacacctcttcatccacaccagacacggagcga
agaactctgacagtaggaatggccaacatggtgctctccttactgtcctccgcctggttc
ccactggatctatccgcgcaccaggacgccctgatgctttctggcaacctgctcgctgct
gtggcccctaaatgcatgcgcaacccctgggctggagaggaggaaggcagcagcggcagc
acaaaccccagcggaggcccaagtaagctggaggaaccctgggcagcgctatcggagcgc
tccctggtggctatgcttgagcagcttttctcccacctactgaagatcctcaacatctgt
gcccacgtgctggatgacacgccaccgggaccagcagctaaggtgactttcccctccctg
accaacaccccctccctcagtcccatccgcaggaaaggcaaagagaaagacgttgctgag
cccagtgctgcccctatgagcccaaagaaaagcaatgaagtcaacacaggcagaccagca
gatggcacaggttcagcagccgtaaacaagtctaccacactcggcagcttctaccacctg
ccaccctacctcaagctctatgacgtcctaaaagctacacacgccaacttcaaggtgacg
ctggacctccacactagccaggagaaatttggaagtttcctgcgtgctactttagacgtt
ctgtcccagctgctggagctggccacactacatgacatcagcaagtgtgtggaggaaatt
ttgggctacctcaagtcctgcttctccagagaaccgaccatggccactgtttgtgtacag
cagctgttgaaaacgctgtttggcaccaacctggcatcccagtacgagggtgtcctgagt
ggacccagtcgttctcagggcaaggctctccgtcttggctcgtccagcctgcgaccaggc
ctctaccactactgcttcatggcgccatacacacacttcacacaggctctggctgacgcc
agtctccgtaacatggtgcaggctgaacaagagcaggacacatctggatggtttgatgtg
atgcaaaaagcgtccactcagctgaggtccaacatcgcaaatgcaacacgcagaggagac
aagaatgccatccacaaccacattcgtctgtttgaaccgctggtgatcaaagctttgaag
cagtacaccaccagcacatctgtggccctgcagagacaagtgctggacctgctagcccag
ctcgtgcagctccgagtcaactactgtctgctggattcagatcaggtgttcatagggttt
gtcttgaagcagtttgagtacattgaagtgggacagtttagagattcagaggccatcatt
cccaacatctttttcttcctggtgctgctgtcttatgagcgttaccactccaagcagata
atcagcatccccaagatcatccagctgtgtgacggcatcatggccagcggcaggaaagct
gtcacacatgccattccagccttgcagccaatcgtccacgacttgtttgtcttgaggggc
tccaacaaagcagatgcaggcaaagagctggatacacagaaagaagtggtggtgtccatg
ctgctcagacttgtacagtaccatcaggttttggagatgttcatccttgtactgcagcag
tgtcacaaagagaatgaagacaaatggaagagactgtccagacagatcgctgatgtcata
cttcccatgattgccaagcagcagatgcatctggactctcctgaggcgctgggagtgttg
aacactctttttgagagtgtagcaccttcctctctcaggcctgtagacatgctgctcaag
agtatgttcactaccccggccagcatggcatcagtagctacagtccagctgtgggtgtcc
ggtatcctggcagtgctcagagtgctggtctcccagtccactgaggatattgtcttgtca
cgggtccacgagctctccctctccccgcatctcctttcctgccacacaatccgccgcctc
catcagcaaaatccttctccaaatgacccgtccgctgctgacatgctggttaaccaggag
tctaatggcgaggcgcaaaaagtcctgcctgaggaaacctttgccaggttcctgctccag
ctggtgggagtgttgcttgatgacatttcatccagacaggttaaagtggacatcacagag
cagcagcacaccttctactgccagcagctgggcacactgctcatgtgtctaatacatgtc
ttcaaaagtgggatgtttcgtaggatcacagctgcagccagccgcctcctgaagggtgag
ggtggcagtggacagactggctctgaggctggtctcttctaccctttagagggtctgaac
agcatggtgcagtgcctgatcaccacccacccttcactggtgctgctctggtgccaggtt
ctccttatcatcgactacaccaactactcctggtgggctgcggtgcaccagacacccagg
agacagagcctctcttgcacaaagctgctgagccctcactcctcaggggaaggtgaagag
gacaaacctgagtcccagttatccatggtcaacagagagattgtacacaggggagccctc
atcctcttctgtgactacgtgtgtcagaacctccatgactcagagcatctgacatggctg
attgtcaaccacgtacgtgacctcatcagcctttcccatgagcctccagtacaagatttc
atcagcgctgtgcaccgaaactcagctgccagcggcctcttcatccaggccatccagtcc
cgctgtgacaacctcactactcccaccatgttgaagaaaactctgcagtgtttggaaggc
atccacctgagccagtctggctccctgctgatgctgtacgtggataagctgctcagcaca
cccttcagggttctggctcgtatggttgacacactggcatgccgcagagtagagatgctg
ctggctgagacactacagaacagtatagctcagctgcctgtggaggaactggacaggatc
caggaatacctccagaccagtggcctggctcagaggcatcagaggttttactccctgctg
gacaggttcagagccactgttgctgacaccagcagccccacccctcctgtgacatcacac
cccttggatggggatccaccacctgcacctgagcaggtcaatgcagataaggagtggtat
gtggctttggtaaagtctcagtgctgtcttcgtggagatgtttccctgttggagacaacg
gagctccttaccaaactacctcctgctgatcttctaaacgttatgagctgcaaggagttc
aacctcagtctgctgtgtccatgcctgagtatgggagtgcagcggttagcgcggggtcag
gggtcactcctgttggagacagccttgcaggtgaccttagagcaacttgcaggggttaca
cagtcacttcctgccccgcaccagtccttcctgccgccttctcagccacagccgtactgg
gaccagctggcggctgtgtatgacaagccaggtttctaccccagggtcttgtcgctttgt
agagctctttcccagtacctgctcagtgtgagccagctgccttcctcactacatatcccc
tctgacaaggaacacctcattaccactttcacctgcaccgccacagaggtgctagtatgg
cgtctgctccaggatcacttacccctgagtgtggacctgcagtgggctctgtcctgcctt
tgcctggctctgcagaagccctgcgtttggaacaaactctccaccccagagtacactacg
cacacctgctccctcatctactgcctacgcctcattatggttgcagtggctgtgagtcct
ggagaccagcttctgcatccagagaagaagaagacaaaggcggagagagacgctgaagat
gacgaagtggactcaccacacgctggccacatgtgcgagtggcaagcatgtgagatcatg
gcggagctggtggaaggcctgcagagtatcctctccctgggtcaccatagaaacagtgca
atccccgcttttctcactccaactttgcgcaacattgtgatcagtttgtcccgactgcct
ttagtcaacagcttcacccgagtacctccactggtttggaaactgggctggtccccacag
ccaggaggagagttcggcacaacgctgcctgagatccctgtggacttcctgcaggaaaag
gatgtcttcagagagttcctctaccgcattaacacactgggctggagtagcaggactcag
tttgaggagacctgggctactctgttgggggtgctggtcacccaaccaatcacgatggac
caggaagaagagacgcagcaggaggaggacttggagcgtacccagttgaatgtgttggca
gtgcaggccatcaccagcctggtgctgagtgccatgactctgcccactgctggcaaccct
gcagtcagctgtctggaacagcagccccgcaacaagagcctcaaggccctggaaacacga
tttggaaggaaacttgcagtaatcaggggtgaggtagagagagaaattcaggctcttgtg
tctaagagagacaatgtccacacacatcatccctaccacgcctgggaccctgtgccctcg
ctgtcagcagcctctgcaggtacactgatcagccacgagaagctgctgcttcagatcaac
acagagagggagatgggcaacatggactacaaactgggacaggtctccatccattcagtg
tggctaggcaacaacatcaccccactgagggaggaagaatggggtgaggatgaagaagat
gaagcagacactccagcacccacctccccgcccatgtctcctattaactccaggaagcac
cgcgcaggtgtggacattcattcatgttcccagtttcttctggagctgtacagccagtgg
ctgatccccggctccccgaataacaggaagactccgaccatactcgtcagtgaagtggtc
cgatcgctgctggcagtgtcggacttgttcacagagaggaaccagtttgacatgatgttc
tccaccctgatggaactgcagaagctccatccgcctgaggatgagatcctcaatcagtac
ctggtgcctgccatctgcaaggcagctgctgtgttgggcatggacaaagcaatagctgag
cctgtgtgtcgcctgttggagacgaccctgcgcagcacccacctgcctagccgcatgggg
gctctgcatggagttctgtatgtgttggagtgtgacctgctggatgacacggccaaacag
ctgatccctaccatctctgagtacctgctgtccaacctcagggctatcgctcactgtgtg
aacctgcataaccagcagcatgtgttagtgatgtgtgcagtggccttctacatgatggag
aactaccctctggatgtaggaactgagttcatggctggaattatacagctgtgcggtgtg
atggtgtcggccagcgaggactccactccctccgtcatctatcactgcgtgctgcggggt
ctggagcgcctcctgctgtcggagcagctgtcacgcgtggatggagaagcgctcgtcaaa
ctgagcgtggacagagtgaacatgccgtccccgcacagagccatggctgctctgggcctc
atgctcacctgcatgtacactggaaaggagaaagccagccccgccagtcgccccacccac
tctgaccctcaggccccagacagcgagtcgatcattgttgccatggagagggtctcggtg
ctcttcgacaggatcaggaagggtttacccagcgaggctcgagtggtgtccaggatcctg
cctcagtttctggacgacttcttcccgccgcaggacgtcatgaacaaggtcatcggcgag
tttctgtccaatcagcagccctatccgcaattcatggccaccgtcgtctacaaggttttc
cagacactccatgccacaggacagtcatctatggtgcgagactgggtgctgctgtccttg
tcaaacttcacccaaaggacaccggtagccatggccatgtggagcctctcctgcttcttc
gtctctgcttccacctcccagtggatctcagccctattgccacatgtgatcagccgaatg
ggctccagcgaggttgtggacgtcaacctgttctgcctggtggccatggacttctacagg
caccagattgacgaggagctggaccgcagggctttccagtccgtctttgagaccgtggcg
tcaccaggcagcccttattaccagctgcttggctgcctgaagtgcatccaccaggataca
tcactctga
DBGET
integrated database retrieval system
