Scomber scombrus (Atlantic mackerel): 133988762
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Entry
133988762 CDS
T10651
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
133988762 (helz)
3'-5' decay
Other 3'-5' decay factors
133988762 (helz)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133988762
NCBI-ProteinID:
XP_062284075
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All DBs
Position
2:13464468..13524247
Genome browser
AA seq
2034 aa
AA seq
DB search
MADRRAEKSCEEASRSLTRREFEAAVSHSTDALVVLAPQAQSSGAPVSPSPPSLVVTSGP
LRSRALLYRIAAFLQLKNYDEADEDCKHVLAEEIARGDGSLQASLRSMLLDGSLQEVASI
LSKALYGEPMNGIVTKDLSRLKMLFSEIEAINREMAPEYTEDQEEEVQDGWQFRPPPRGV
TSSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENY
METLIEKWMNSLCPEKVLSDCLEGVNVETSSSLSVTVTTKKSSHSWTFSLLCKPARKLYR
IALLYDAHRPHFFITGVSAGERLEALPQGCQEWTPGEETAVAVDNGMDHCVYKVAVGFST
EIFGTFRQTVVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLMTAKRWDSSCKTIVE
FCPNETMAELERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV
LVLPLGREGFISHAPPGVKERVYEAVIEEKTKDYIFLRICKNCCEELGLLPDREIQVELQ
FQLNRLPLCEMHYALDRIKENNILFPDIGMVPTIPWSPNRQWDEQLDPRLNAKQKEAILA
ITTPVTIPLPPILIIGPYGTGKTFTLAQAVKHILRQDHSRVLICTHSNSAADLYIKDYLH
PYVEAGNPHARPLRVYFRNRWVKTVHPVVQQYCLISSTHMTFQMPTREDILRHRVVVVTL
STSQYLCQLDLEPGLFTHVLLDEAAQAMECETIMPFALASKTTRIVLAGDHMQLSPFVYS
EFARERNLHVSLLDRLYEHYPAEYPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQP
SHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGV
VSPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRK
EQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICH
ENTSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHHSSSQVLHPHHHPN
PQHAQPTSIKQGPQQQQQQQQQQQQSPPKGKHANHTEHVPPEGYGQPNTNVLMGNPIRAF
TPPLGGTPAGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPLPWPGYQNRFAVD
PRIMSHQAAMAYNFNLLQAQNRGSPIPYSGVAHPSPLGMGQPSPDKELQTDPIRNGKLEG
CPKSEQSRLQTPERKSTDIKDKQANLDTGQSRSLDSQTDGLVGFPNALLHRKDPSAAQRP
LNYHLAPPNPAFPPHPASGRPFPPQYPVSRLPYRVNQPQHPGMAQQSQQQQLSPAYTGGS
HNASFFSGPMAPHRAVQSPTLDGPESGGVEEMSRTPMGHPGGHHPGLSQHNRVNSFGEDG
QDGSLGDSLDLQGPLALEALNQQQQAARLGQWGEAAGPFLPGSVAFPLPQQIAHLAQPGM
ARFPHQLLRAASWGLSANMEDEGVPSVPTGPPFTRYPGLLREMPPQEQPEPREAAEMQPP
PQSRLLQYRQSQSRSSGDPSSANHAGPFPSGPYSHETGRDILNDNLLNNPALQQQHHPGN
PLYNAGSYPHQPPAHPVSPPPSQVKYLLQEAQWSHGGASSVSPPQQNHLLGNQGHGLPYG
LPIMAHPSRQEQVHLMQLHHQHQQQQQQQQQQQQQQQQQQQQHQHQQQSQGPDQDSYHSL
SPRTSAATALHSVDEYEPRGPGRPLYQRRISSSYPDESSPANTHNTLSHHPQPCTSDPQD
HPHPHIQHHQHPHTPYSYPPHDLWPSNGGGPGPFQNIPCNGAGTLTQHRDLLASKALRQT
EEQVKAEATAAQQTHPHSLNSLQHLGQFPPLMPNNKQQQQQPPPPPQAPTEPNQGAPNLS
KPPTMSYASALRAPPKPRAVRPEQVKKNSDPLSLLQELSIGSSIGSNGYYSYFK
NT seq
6105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagctagcagatcgttaaccaggcgg
gagttcgaggcggcagtcagccacagcacggacgccctggtggtccttgcaccccaagcc
cagtcctccggtgcccctgtctcgccgagccctccatcccttgtcgtcacctccggaccc
ctccgcagccgtgccctgctttaccgcattgctgccttccttcagctgaaaaactatgat
gaagcagatgaagactgcaaacatgtgttggcagaagagattgccaggggagacggttcg
ctacaggccagcttgcgctccatgctattggatggcagcctgcaggaggtggccagcatc
ctctccaaagccttgtatggagagccaatgaatggcattgtcacaaaagacctgtccaga
ttaaaaatgctcttctcagaaatagaggcgataaatagagagatggcaccagaatacaca
gaagaccaggaggaagaggtccaagatggctggcagttccgacctcctccccgaggagtc
accagcagtgaggagtacaccctctgtaaaaggtacttggagcagggtctttgtcggtac
ggggcccagtgcacgtcagcccactcgcaggaagagctgatggaatggcagaagcgctat
gcttcacgcctcatccgcctcaagcagcagcaggagagcaaacacttcaccgaaaactac
atggagaccctgatagagaagtggatgaactcactctgtccagagaaagtgctaagtgac
tgtttagaaggagtgaatgtagaaaccagttccagcctctctgttactgtgaccaccaaa
aagtcctcccactcctggaccttctccttgttgtgcaagccggctagaaagctctaccgc
atcgccctcctctatgatgcccaccgaccgcacttcttcatcacaggcgtgtctgctggc
gagcggctcgaagccctcccacaaggctgccaagagtggactccaggagaggagacagca
gtggcagtggacaacggcatggatcactgtgtctacaaggtagcagtgggcttcagcaca
gaaatctttggtaccttcagacagaccgttgtttttgacttcggctcagagcctgtgcta
atgcaacggatcatggtggatgctgcgtctattgaagacctagaacacctgatggcagcc
aggcagcagctcttaatgactgcaaaacgctgggactcttcctgtaagaccattgtagaa
ttctgtcccaatgagacgatggctgaactggagcgcagcctcctttcccgctatcagatc
cctctgtcggccgaccagctcttcacccagtcagtcctggacaagactctgaccaaagac
aactaccaggcccgactgcatgacctgctctacatagaagagattgcacaatataaggaa
gttagcaagtttaacatcaaagtgaacctccagctggtcaccagctttatgttgactggc
atctctgttggagccaagtatgcccagaatggacagctctttgcacgtttcaaactcacc
gaaacactgtctgaggacacactggctggtcgattggtgatgaccaaggtgaattcagtc
ctcgtgctgcctttgggccgtgaggggttcattagccacgcacctcccggggtcaaagag
cgtgtttacgaggctgtgattgaggagaagaccaaggattacatctttctaaggatctgc
aagaactgctgtgaggagcttggactgctgcctgacagagaaatacaggtggagctccag
ttccaactgaacagactaccactgtgtgagatgcactatgccctggatcgtatcaaagaa
aacaacatcctctttcctgacattggcatggtccccaccatcccctggagcccaaacagg
caatgggatgagcagctggatccccgtttgaatgccaagcagaaagaagccatcctggcc
atcaccacacccgtcaccatccctctgcccccaatcctcatcatcggaccctatggcacc
ggcaagacattcaccctggcacaggctgtcaagcacatcctgcgccaggaccacagcagg
gtcctgatctgcacccactccaacagtgcagctgacctttacatcaaggactaccttcat
ccatatgttgaagcaggcaatccacatgccagacctctcagggtgtacttcaggaaccgc
tgggtgaagacggtccacccagtggtccagcagtactgtctcatctccagcacacacatg
actttccagatgcccacaagggaggacatcctcaggcaccgtgtggtggtggtcaccctc
agcacctcccaatacctctgccagcttgacttggagcctggactgttcactcatgtcctc
ttggatgaagcagcccaggccatggagtgtgaaaccatcatgccttttgctctagctagc
aagaccactcgcattgtgttggctggagaccatatgcagctcagtccatttgtgtacagc
gagtttgcgcgggagcgtaacctgcatgtgtcactgctggaccgactgtatgagcattac
cccgctgaatacccctgtcgcatcctcctgtgcgagaactaccgctcccatgaagctatc
atcaactacacgtcagagttattttatgatgggaagctaatggcaagtggaaagcagccc
tctcataaggacttctaccctctgaccttcttcacagccagaggagaagatgttcaggag
aaaaacagcactgcctactacaacaacgctgaggtatttgagattgttgaacgggtcgag
gagttgcgcaagaagtggccggtagcctggggcaagctggatgagggcagcatcggagtg
gtgtcaccatacgccgaccaggtgtttcgcatacgtgctgagctccgaaagaagagaatg
cacgaggtcagcgtggaacgagtgctcaacgtccaaggtaaacagttccgggtgctgttt
ctcagcacggtgcggacgcggcatacctgcaagcacaagcagacggccatcaagcgtaaa
gagcagctagtggaggactcaacagaggacctggactatggatttctgtccaactacaag
ctccttaacacagccatcaccagagcccagtccctggttgccgtcgtgggagaccccata
gcactgtgctcagtcggacgctgcaggaagttctgggagcactttatctccatctgccat
gaaaacacaagccttcatggcatcacctttgagcagatcaaggctcagctggaggccctg
gagctcaagaagacctacgtcctcaaccctctggccccagagttcatcccccgtgccctc
aggcccctgcaaggccaccactcttcctcgcaggtcctccatccccaccatcatccaaat
cctcagcatgcacagcccacctccatcaagcagggtccacaacaacagcagcagcagcag
caacagcagcagcagtcacctcctaaggggaaacacgcaaaccacacagagcatgttcca
cctgaaggatatggccaacccaacacaaacgttctgatgggaaacccgattcgggcattc
acaccacccttgggtggcacaccagctggcatgggcaagtcacccagccctgttcagagg
atagatcctcatacaggcgccagcatcctgtatgttccagctgtatatggtggaaatatg
gtcatgtccatgcccctgcctttgccttggccaggttaccagaatcgctttgctgtggat
cctcgcatcatgagccatcaggcagccatggcctacaactttaacctgttgcaggcccag
aatcgaggctcccccatcccttacagtggggtagcccacccctctcctctaggaatgggg
cagcccagccctgacaaggagctacagacagaccccatcagaaatggtaaattagaggga
tgtccaaagtcagagcagagccgtcttcagacaccagagaggaaatccacagacataaag
gataaacaggcaaatttagacacaggccaaagtcgaagtctggactcacagacagacggg
ctagttggatttcccaatgcactgctccatcgaaaagacccctcagctgcccaaagaccc
ctcaactaccacctggcaccacccaacccagcttttcctccacatcctgccagtgggaga
cccttccccccacagtatccagtctctaggcttccttatcgggtcaaccagcctcaacac
cctgggatggcccagcagagtcaacagcaacagctcagccctgcctacactggtggtagc
cacaacgcttccttcttcagtggccccatggcacctcatagggctgtccagtctcccacc
ttggatggaccagagtctggaggagtcgaggagatgagtaggaccccaatgggccacccg
gggggccaccacccaggtctatcacagcacaacagggtcaacagctttggggaggatgga
caggatggaagcctgggtgatagtttggacctccagggtcccttggcgctagaggccctg
aaccagcagcagcaggcagcaaggctcggccagtggggagaggctgcaggtccgttcctt
ccgggcagcgtcgccttccctctgccccaacagatcgcccaccttgctcagcccggcatg
gctcgtttcccccatcagctgctgcgggcagctagttggggccttagtgccaatatggag
gatgaaggtgttccttctgttcccactgggccacctttcaccaggtacccgggcctcttg
agagagatgcccccacaggagcagcctgaacccagagaagcagctgagatgcaaccccct
cctcaatctcgtctcctccagtaccgccagtcccagtcccgttcctcaggtgacccttca
tccgcaaatcatgctggcccttttccatcaggaccttactcccatgaaactggtcgcgat
atccttaacgacaaccttctcaacaacccagctctgcagcagcagcatcacccggggaac
cccctatacaatgctggtagctaccctcatcagccaccagcccaccctgtcagcccccct
ccctcccaggtcaaataccttctgcaagaggcccagtggtcccacggtggagcttcgtca
gtgagcccaccacagcaaaaccatctgttaggaaaccagggccacggccttccctatgga
ctgccgatcatggctcaccccagtaggcaggagcaagtccacttgatgcaactccaccat
cagcaccagcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaa
caacaacatcaacatcaacaacaaagtcaaggtccagaccaggattcttaccactcactg
tcccccagaacatcagcagccacagcccttcacagtgtagatgagtatgaacccagaggt
ccaggtcggcctctttatcagcgccgcatctcttctagctacccagatgaatcgtctcca
gccaacacccacaataccctgtcccatcatccccagccgtgtacatcagacccccaggac
cacccccatccgcacatacagcatcatcagcacccacacaccccctacagttatccccca
catgacctctggcccagtaatggcgggggtcccggtccgttccagaacattccatgtaac
ggagccggcacactcacgcagcaccgggaccttctagcttctaaggcccttcgtcagaca
gaggagcaggtgaaagccgaggccacagcagcacagcagacacacccgcactccctcaac
tcccttcagcaccttggacagtttcctcccctcatgcccaataacaagcagcagcagcag
cagccaccgccaccaccgcaggctcccacagagcccaaccagggtgctccaaatttaagc
aaaccacccaccatgtcctacgccagcgccctccgtgctccacctaagccccgagctgtt
cgccctgagcaggtcaaaaagaacagcgacccgctctccctcctacaggagctgagtata
ggaagttcaattggtagcaatgggtactattcctacttcaaatga
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