Scomber scombrus (Atlantic mackerel): 133990172
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Entry
133990172 CDS
T10651
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133990172 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133990172 (copb2)
Membrane trafficking [BR:
ssco04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
133990172 (copb2)
Exosome [BR:
ssco04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
133990172 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_LRRK2
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
HEAT_GCN1
DUF3682
BSP_II
Motif
Other DBs
NCBI-GeneID:
133990172
NCBI-ProteinID:
XP_062284328
LinkDB
All DBs
Position
11:11842557..11850852
Genome browser
AA seq
948 aa
AA seq
DB search
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEIQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSIVKIFKNFKE
KKSFKPDFGAEGINGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMSEKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNATMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDQCLELLIKTNRLPEAAFLARTYLPSQVSRVVKLWRENLAKV
NQKAAESLADPTEYENLFPGLKEAFAAEHYLRESCLGTTRPAKDYPLVTLNEDRNILEEA
QGYEPKGTFLPPVTKTQDSEESTSVAAAPEAFMPSQPEPAAPTPQEEEEEEEEEEEEEVE
EEEEVDEEEETQSQKDKCLDELEVDLDNMELDDIDTTDVNLDDDFLDD
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgaggctggacattaagcggaggctgacagccaggtctgatcgagtgaagagt
gtggaccttcatcccactgagccatggatgctggccagtctgtacaacggcagtgtctgt
gtgtggaaccacgaaacacagaccctagtgaagacttttgaggtgtgtgatcttcctgtc
agagcctctaaatttgtggccaggaagaactgggtgatcacaggagcggatgatatgcag
atccgtgtgttcaactacaacaccttggagcgggtccacatgtttgaggcccactctgat
tacatccgctgcatcgctgttcacccaacccagccatacatcctcaccagcagcgatgac
atgttgatcaagctatgggactgggacaagaagtggtcgtgcagtcaggtgtttgagggt
cacactcactatgtcatgcagattgtcatcaaccccaaggacaataatcagtttgccagc
gcttccctggacaggacaatcaaggtttggcagcttggctcttcgtctcccaatttcact
ttggagggtcacgagaaaggagtcaattgtatcgactactacagtggaggagacaagccc
taccttatatcaggggctgatgaccgccaagtcaaaatctgggactatcagaacaagacc
tgtgttcagactctggaaggccacgctcaaaatgtctcttgtgtcagcttccacccagag
cttcctatcattatcactggatccgaggatggtactgtgcgtatttggcactctagcact
taccgcctggaaagcacactgaactatggcatggagcgagtgtggtgtgtatgcggtctc
aggggctccaacaatgtggcattgggctatgatgaaggcagcatcatcatcaaagtgggt
cgtgaggagccggccatgtctatggacaccaacggcaaaatcatttgggccaaacacagc
gaaattcagcaggccaacttaaaggcaatgggtgatgccgagatcaaggacggagagaga
ctcccactggctgtaaaagacatgggcagctgtgagatttacccccaaaccatccagcac
aacccgaatggaaggtttgttgtggtgtgtggagatggagagtatatcatctacactgca
atggctctgaggaataagagctttggctcagcacaggagtttgtttgggcacatgactct
tctgaatatgccatcagagaaagcaacagtattgtcaaaatcttcaagaatttcaaagaa
aagaaatcttttaagcctgactttggagctgaagggattaatggaggtttcttgctcggg
gtgaggtcagtgaatggcttggcattttatgactgggagaacacagaactgatccgccgc
attgagatccagcccaaacatatcttctggtcagactctggtgagctggtctgtatcgct
acagaggagtccttcttcattctgcgttacatgtcagaaaaagtagccgcctcccaagag
aacaatgaaggagtgacagaggatggtattgaggatgcatttgaggtccagggagagatc
caggagattgtgaagactggactctgggttggagactgcttcatctacaccagctctgtc
aacagactcaactattatgtaggaggagagattgtcacaattgctcacctggacagaaca
atgtacctgctgggttacatacccaaagatgaccgtctgtacctgggagacaaagagctc
aatattgtcagctactccctgctggtgtctgtcttggaataccagactgccgtaatgaga
agggactttggaatggccgacaaggtgcttcccacaattccaaaagagcagcggaccaga
gtggcccatttcctggagaaacagggtttcaagcagcaggcactggctgtgtccacagac
cctgaacacaggtttgagctggcgttgcagctgggagaattgaagatcgcctaccagctg
gctgtggaggcagagtcggagcagaagtggaagcagttagcagagctagctatcagtaag
tgccaattcgggttggcccaggagtgcttgcaccacgcgcaggattacggcggcctgctt
ctccttgccacagcctctggcaacgcaaccatggtgggcaagctggctgagggggcagag
agagatggaaagaacaatgtggccttcatgacctacttcctgcaggggaaactggatcag
tgtctggagctgctgatcaaaactaacagactacctgaagctgctttcctggctcgcacc
tacctgcccagccaggtgtcccgtgtggtcaaattgtggagggaaaacctggccaaagtc
aaccagaaggcggctgagtccttagcagaccctacagagtatgaaaatctgttccctggg
ctgaaggaagcctttgcagctgagcattacctcagagagagctgcttgggcaccaccagg
ccagccaaagattatcctctggtcacgctcaatgaagacaggaatattcttgaggaggct
cagggatatgagcccaaaggaacgttccttcctcctgtcaccaagacacaggatagtgag
gagtccacctcagtggcagcagctcctgaagctttcatgccttcacagcctgaacctgca
gctcctactccacaggaggaggaggaggaggaggaggaggaggaggaggaggaagtagag
gaagaggaggaggtagacgaagaggaggagacgcagtcacaaaaagataagtgtttggac
gagctggaagtggacctggacaacatggagctagatgacatcgacaccacagacgttaac
ctggatgacgactttctagatgattga
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integrated database retrieval system
