Scomber scombrus (Atlantic mackerel): 133990175
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Entry
133990175 CDS
T10651
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133990175 (rc3h1b)
04121 Ubiquitin system [BR:
ssco04121
]
133990175 (rc3h1b)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133990175 (rc3h1b)
Ubiquitin system [BR:
ssco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133990175 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
133990175
NCBI-ProteinID:
XP_062284331
LinkDB
All DBs
Position
11:complement(14650752..14664653)
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AA seq
1135 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALISSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGLMPDEGLPLDVAVTRKPSP
LTNGSGAPSLPQLIARGTDTVPYELLRKPMKMDGGSPSAPGSPPDPMDSVPKPGMPLPPH
ALAHPRMPADHLSGVKQMPVVPRGSPVYPQPQLSEMFYSDTRPPPSGPQYEPSQYPPGYP
YQQPPQYVPRDYMRNPPPSESGPPYHDPYPGYGPPERPYQAPHSGPPFSYPHPPHYDRGR
HGTYSGPPPPPQPYTSQRESLVRMSPAPLDVPPPSAGQANSLYHPEASARDRYPPDGYYQ
AGAQPPPMRAYPRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLSHTFP
SDYPPEYGEESSKTIGKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVPGTMEMMNV
EAKGLREPSLEAPRRGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTSGPVQAMAST
PQNPNSKHMAMPAEYTYGSHGGWGGASYPSHQTASSSQGHFSERLPMAATDREQLKIELQ
QVNQQINQQTQMHSMEAASNTLVLQREASALAGQSVQSSHGQAAAAQQQQQAKWPAGGAG
ATAVSSEQLSLELHQVEREIGKRTREMAMEKQVAHEVQQYKMKPAENGQPEHKTQLEEIS
LALGEVSNGSSSLQESAVGGSMLSLTNKTSALSLCSDPGATGSEMQKNGVVHSCS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccgatctgcacacagaca
tttgaggagactgttcgccgacccatcagtttgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagctacctgttaacacagccctgttgcagctggtgggaggccaggttcctaag
gctcagccagttgccttgatttccagtccagaggactcgcagcattatgaggaggccagg
cagtgtgtggaggagttggccctctacctcaaacccctcagcaacacccgaggtgtgggt
ttgagcagcacggcccagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggtagaggaagagggccgcgtgagggccatgagagctgcccgctct
ctgggtgagcgaactgtcaccgaactaatcttgcagcatcagaatccacagcagctctcc
tccaatctgtgggctgctgtccgtgcacgaggatgtcagtttcttggcccagccatgcag
gaggaggctctgaagttggtccttcttgcactagaggatggttctgctctgtccaggaag
gtgttggttctctttgtagtccagaggcttgagcctcgcttcccacaggcatctaagacg
agtataggtcatgtggtgcagctcctgtacagggcctcatgcttcaaggtgaccaaacgt
gatgaagattcatccctaatgcaactgaaagaagagtttcgtacttacgaggctctgcgg
cgcgagcatgactctcagattgttcagattgccatggaaggtgggctgcgcatcgcaccc
gatcagtggtcttctctgttatatggagatcagtctcacaagtcacacatgcagtctatc
atagataagctgcagaccccagcgtcctttgctcagagtgtccaagagctgacgattgcg
ctacagaggactggagacccggccaacctcaacaggctgcggccccacctggaacttctg
gccaacattgaccccagtcctgatgctccccctcccacatgggagcagctagagaagggg
ttggtagcagtgaagacggtggtgcatggcctggtagactttatccagaaccatagcaag
aaaggagctgaccctcagcagcctccccagcacagcaagtacaagacatacatgtgtcgt
gacatgaagcaaaagggtggctgtcctcgtggagccagctgcacctttgctcactctcag
gaagaactggagaagtatcgtaagatgaataagcgcctggcagctcgcctccctggctca
gggctcatgccagatgaaggccttccccttgatgtagcagtgacccggaagccttcacct
ctcaccaatgggagtggtgcaccctctttgccccagctcattgcccgtggcacagacaca
gtcccatatgaactgttgcgtaaacccatgaagatggatggagggagtcccagtgcccca
ggatcaccacctgatcccatggactctgtgcccaaacctggtatgcctctgccacctcat
gcactggcccaccccagaatgcctgcagatcacctctctggggtgaagcagatgcctgtg
gtacctagaggttcaccagtgtacccccagccacagctctctgagatgttctactctgat
actcgcccaccaccttctggtcctcagtatgaaccttcacaataccccccaggttacccc
taccaacagccaccacagtatgttcctcgggattacatgcgtaacccaccccccagtgag
tcagggcccccttaccatgacccctaccctggctatggcccaccagagcgcccttaccag
gcccctcactctggcccacccttctcctaccctcaccctccacactatgaccgaggtcgc
catggcacctattctggccccccacctcccccacagccttacacatctcagagggaaagc
ctggtcagaatgagccctgcgcctctggatgttccccctccatcagctggacaggctaac
tcactctaccacccggaggccagtgcccgggatagatacccaccagatggctactatcaa
gcaggtgcccaacctccaccaatgagggcttatcccagagggccatcatatagtggttcc
cagcccagcctggactaccttcacagacgtcggcaggagctgttatcccagctggaagaa
aggaaagtcatctcccctccaccatttgctgcctcccccactctttctcataccttccca
agcgactaccctcctgagtacggagaagagagctccaaaaccattgggaaatgcagagag
cctgactatgctgggcaatactcaccctggtcttgcgaaaccattggatcctacattggc
acaaaggacgccaaacccaaagatgttatggttcctggaaccatggaaatgatgaatgtt
gaggctaagggtctgagggaaccatcacttgaggcccctcgtaggggtacagaagtcaag
gacgatgaccctattatcccgtttggcccccagcccactgtatcacgctttggggccatc
tcccgcacctcaaagacaggctatcagacttccggccctgtacaggccatggcctccact
ccccagaacccaaactctaaacacatggccatgccagcagaatacacatatggaagccat
ggaggatggggtggagcttcatacccctcccaccagactgcctcctcctctcagggacac
tttagtgagcgcctgcctatggcagccacagacagagaacagctgaagattgaactgcag
caggtcaaccagcagatcaaccaacagacccagatgcacagcatggaggctgccagtaac
actttagtgctgcagagggaggccagtgcattggcaggtcagtccgtgcagtccagccat
ggtcaggcagcagcagcccagcagcagcaacaggccaagtggccagcagggggagcaggt
gcaacagctgtgtctagtgaacagctgagcctggagctccaccaggtggagagagagatt
ggaaaaaggacccgtgagatggccatggaaaaacaagtagctcatgaagttcagcagtac
aagatgaaacctgcagagaatggacaaccagagcacaagactcagctggaagaaatctct
ctggctcttggcgaggtgtcaaacggctccagcagtctgcaagaaagtgcagtgggcggg
tccatgctgtcactgaccaataagacgtctgcgttgagcctgtgttctgatccaggtgcc
actggttcagagatgcagaagaatggcgttgtccattcctgctcttag
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integrated database retrieval system
