Scomber scombrus (Atlantic mackerel): 133990200
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Entry
133990200 CDS
T10651
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03008
Ribosome biogenesis in eukaryotes
ssco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133990200 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
133990200 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133990200 (xrn1)
03009 Ribosome biogenesis [BR:
ssco03009
]
133990200 (xrn1)
03016 Transfer RNA biogenesis [BR:
ssco03016
]
133990200 (xrn1)
03036 Chromosome and associated proteins [BR:
ssco03036
]
133990200 (xrn1)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133990200 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
133990200 (xrn1)
Ribosome biogenesis [BR:
ssco03009
]
Eukaryotic type
Pre-60S particles
RNases
133990200 (xrn1)
Transfer RNA biogenesis [BR:
ssco03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
133990200 (xrn1)
Chromosome and associated proteins [BR:
ssco03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133990200 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
133990200
NCBI-ProteinID:
XP_062284397
LinkDB
All DBs
Position
11:5729504..5750910
Genome browser
AA seq
1681 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDRLWQDVSVYLSGHETPGEGEHK
IMEFIRSENGKPSHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLMREYIDYEFSDIRKHIGSDYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISVLPSLGGYLNENGHLNLRNFEKYLEKLAEFDREHFSDVFVDLK
WFESKVGNKYLNEAAGLAAEKEAASKDTNKEDSSLCLAALTLSDRVTEGGKGAAAEDEEE
EEDMFETEFRQYKRTYYMTKMGVDVVSDEFLAQQAKCYVEGIQWILHYYYHGVQSWSWFY
PYHYAPFLSDIRNISGLKLTFDLGKPFMPFQQLLAVLPAASMALLPESYRHLMTSENSPI
IEYYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPCNHKLTKEEKARNCHTECAVY
TYDPEIDSSYSSSLPQLFPDIVHCHARKASIAMDAWHVGLDHVGRRMDKSALYFCGFPTL
QHIRHKFYKKKSGVVVFQQSSRGENTILDILPSQEGEPVCDDVAARVLGKPVFVNWPHLE
EARIIAVSDGDTKFSLEEPPGVQRIYDRPSTPPPTKVNRLSDKEQKDWVKDVQGITEYFM
KRKGIIVNETVVVLYGQTLTGRKYVPKANGVVELEKQWSKQVLPFAYQTVVKDIEAFYSS
LTCFKSLDELFPPSTTVFMVGNPYYGAIGEVQDSSDVIKDGRVRVVFNVPHEPQLEPLIQ
NQHKYCVKYSPGYVLASRLGVTSYLVSRFSGSVFIGRGSKRNPCGEQKANVGLNLKFNKK
NEEVPGYTKRTEKEWLYSAAVEELLAEYLDRFSEVLNSVSRNSHDDVFYEDDIWPGEDQN
GAEKVSEITSWLKSHPVSSISRSSCDLQVLDTAIVERIEEAVEKSKVKKSTKKVRVTVKP
HLLFRPLEQQQGVVPDPDGEYRLFDRVINVRESFTVPLGLRGTVIGIKGAEREAEVLYEV
HFDEEFAGGLNIRCASLRGYRLPPCALINLSHGARVDHTSHKLTAIVKPQPAAAGNYNSQ
RQMGGLNHSPRSPFIPTQHNNKHNTAKAASQGNRSSPSKGPIQKQQAKGKEEYSNVWQTL
QNSGPPTKPPAHWQNNAPTGNIRLLKKNEDANSLLPTQNTANKNTTEFEDLIASLMISKG
TPPPAAPAQAPTSQSDGPLSPQSFAMKGTMMLKEMLKIDSAGTGSPSPQEMASSAGQQQN
RRRSSKKLAANMNVPHGDTASPVPPASSTSANLPNPMLASKVSELACVCVGLGMAPPDFS
LIRNRQGLVVCQVKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSVGSGFPLPPPMFPG
MGQIRPPPIGAMNPVFNQSSGLLLPPQGYPAPLWGMPLPPHHHQNQPFFGATGTFPGAAR
PQPATSLPIGSHNQFIPLQVTKKRVSANKKNQDTREFYSAAHTVARNQSHKTQNQASGQS
DQPHQQPASSNPSSTSPSPADAVPMTPPRQNPPSTGHTPGSSSKRKHRKLAVNFEAAKVS
E
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccgaagttttaccgctggatctcggagcgctatccgtgtctgagtgaagtt
gtgaaggaacatcagattccagaattcgacaatctctacctggacatgaatgggatcatc
caccagtgttcccaccccaacgacgaggacgtccacttccgcatctcagaggaaaagatc
ttcgcagacatcttccactacctggaggtgctcttcaggatcatcaagccgcgcaaggtc
ttcttcatggctgtggacggcgtggcgccgagggcaaaaatgaaccagcagagaggacgc
agatttaggtccgccaaagaagcagaggataagataaaaaaagctctagataaaggagag
gtgcttcccacagaggctcgctttgattccaactgtatcactcctggcactgacttcatg
gcgagactccaggagcagctcaaatattttgtccacaacaagctctccactgacaggctg
tggcaggatgtcagcgtctacctgtccggtcatgagacaccaggggagggagaacataag
atcatggagtttattcgctctgagaacggcaagccgagtcacaaccctaacacccgacac
tgcctatacggtctagatgctgatctgatcatgttgggtttgaccagccacgagccaaat
ttctccctgctcagagaggaggtccgcttcggaggaaagaaaaaccagaaaaggataaca
gctccagaggaaacaactttccacttgctacacttgtctctcatgagggagtacattgat
tatgagttctctgacatcaggaaacacattgggtctgactatgacttggagcgaataata
gacgactgggttctaatggggttcctcgtggggaacgatttcatccctcaccttcctcat
cttcacatcaaccacgacgctctgccactgctgtataagacctacatcagtgtactgccc
agcctggggggttatctgaatgagaatggccacctcaaccttaggaactttgagaaatac
ctggagaaacttgctgagtttgaccgggaacattttagtgacgtgtttgtggacctgaag
tggttcgagagtaaagtcggtaacaagtatctgaacgaggcggcgggcctggcagcagag
aaggaagctgccagcaaagacaccaacaaggaggattcgtctctctgtctggcagctctg
accttatcagacagagtgacggaaggaggtaaaggagcagcggcagaagacgaggaagaa
gaggaggatatgtttgaaacggagttcagacagtacaaacgcacatactatatgaccaaa
atgggcgtggatgttgtgtcagatgagtttctagcccagcaagccaaatgttacgtggaa
ggtatccagtggattctgcactactattaccatggcgtccaatcctggagctggttctac
ccctaccactacgctcccttcctgtccgacatcaggaatatatccgggttaaagttgacc
ttcgatctcggaaaacccttcatgcccttccagcagctgttagcggtcctgcctgctgcc
agcatggcgctgctgccagagagttacaggcacctgatgaccagtgaaaattcacctatt
attgagtactaccctctagactttaaaacagacctcaatgggaagcagcaggagtgggag
gctgtggtgctcattcccttcatagatgagagatgcttgctggcagccatggagccctgc
aatcataagctgactaaagaagagaaggccaggaactgtcacacagagtgcgccgtctac
acgtacgaccccgaaatagactcctcctacagctccagcctgcctcagttgttccccgac
atcgtccactgccacgccaggaaagcaagcatcgccatggatgcctggcacgtggggtta
gatcacgtgggcaggcgcatggataagtcggctctgtacttctgcggcttccccaccctg
caacacatcagacacaagttttacaagaagaagagcggcgtggtcgtgttccagcagagc
agcagaggggagaacacgatcctggacatcctccccagccaggaaggagagccggtctgt
gatgacgttgctgcacgagtactcggcaaacccgtgtttgtcaactggccgcatctagag
gaagctcgtatcatcgcggtgtcggacggagacacaaagttttctctagaggaaccgccg
ggtgtccaaagaatctatgacagaccctccactccccctcccaccaaagtcaaccgcctg
tcagacaaggagcagaaggattgggtgaaagacgtccagggaatcactgaatatttcatg
aagaggaaaggcatcatagtgaatgagacagtggtggttttgtacggccagacgctgacg
ggaaggaaatacgtccccaaagccaacggggtggtggagctagagaaacagtggtccaaa
caagtccttcctttcgcctaccagactgtggttaaggacatcgaggccttttactcgtcc
ctgacctgctttaagagcttagacgagctctttcctccatcaactaccgtcttcatggtg
gggaacccgtactacggtgccattggagaggtgcaggactccagtgatgtcatcaaagac
ggccgggtccgtgtggtcttcaacgtgccgcacgagcctcagctggagcccttaattcag
aaccagcataaatactgtgtgaagtacagtcccggatacgtcctggcatctcgcctcggc
gtcaccagctacctcgtctcccgcttctcgggaagtgttttcattggcagaggatcaaag
aggaatccctgcggtgagcaaaaagctaacgttggcctgaatctgaagttcaacaagaag
aatgaagaagttcccggatacaccaagagaactgaaaaagagtggctgtactctgctgct
gtggaggaactgctcgctgaatacctggatcgattttccgaggtattaaactcagtgtcc
agaaacagccatgatgatgttttctatgaggatgacatctggcctggagaggaccagaac
ggggccgagaaggtgtctgaaatcacctcgtggttgaaaagccacccagtcagctccatc
agcaggtcgtcatgtgacctgcaggtgctggacacggccatcgttgagaggatcgaggag
gcagtggagaaatccaaggtgaagaagagcacgaagaaagtccgtgtgactgtcaagcct
caccttttgttcaggccgttggagcagcagcagggtgtggtcccggaccccgatggcgag
tatcgcctgtttgacagagtcatcaacgtgagggagagcttcaccgtccctctgggactc
cgaggaaccgtcatcggcattaaaggagctgagcgggaggcagaggttctctatgaggtg
cattttgatgaggaatttgctggaggtctcaacatcaggtgcgcgtcactccgtggttac
cgcctccctccctgcgctctcatcaacctctcccacggcgcccgagtggatcacacctcc
cacaagctcaccgccatcgtcaaacctcagcccgccgcggccggcaactataactcccag
cggcagatgggcggcctcaaccactcaccgcggtcacccttcataccaacacaacacaac
aacaaacacaacacggcgaaagcagcgtcccaaggcaacaggagctctccctctaagggt
cccatccagaaacaacaggccaagggtaaagaagagtacagtaatgtgtggcagactctg
cagaactcaggacctcctaccaaacctcctgctcactggcaaaataatgccccaactggt
aacatcaggctattgaagaaaaatgaagatgccaactctcttttacccacacagaacaca
gccaataagaacaccactgagtttgaggacctgatagccagtctcatgatctccaagggt
accccacctcctgctgcccctgcacaagcacccaccagccaatcagacgggccgttgtct
ccacagtcctttgccatgaagggaaccatgatgctgaaggagatgctgaagattgacagc
gctggaacaggaagtccctccccccaggagatggcctcctctgcgggtcagcagcagaac
aggagacgatcatccaaaaaactagctgcaaacatgaacgtcccacacggagacacagct
tcaccagttcctcctgcgtcctccacctcggccaacctccccaaccccatgctggccagt
aaggtgtcagagctggcgtgtgtgtgtgtggggttgggcatggcaccacccgatttcagc
ctcataaggaacagacagggtctggtggtgtgtcaggtgaagctgtccaacgggttaatg
gttcacggtccacagtgtcagtcagaaaatgatgccaaggagaaagctgctttctttgcc
ttacaaagactgaactctgtgggctcaggcttccccctcccacctcctatgttccccggg
atgggccagatacgacctccacctatcggagccatgaacccggtcttcaaccaatcaagt
ggcttgctgttgcccccccagggttaccccgcacctctatgggggatgcctctgcctccc
caccaccaccagaaccaaccgttcttcggagctactgggaccttccccggtgctgctcgc
ccccaacctgccacatcactgcccatcggctcacacaaccagttcatcccgttacaggtg
actaagaagcgagtctcggccaataagaagaaccaagatacccgagagttctacagcgcc
gcccacaccgttgccaggaaccaatcacataaaacccaaaaccaggcgtccggccaatca
gaccagccccaccaacagcccgccagcagcaacccctcctcaaccagtcccagcccagca
gacgccgtgcccatgacccctcctcggcaaaaccccccatcgacaggccacacccccggc
tcatcctccaagaggaagcacaggaagctggctgtcaattttgaggcggctaaagtctct
gagtga
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