KEGG   Scomber scombrus (Atlantic mackerel): 133990248
Entry
133990248         CDS       T10651                                 
Name
(RefSeq) integrin alpha-6-like isoform X1
  KO
K06485  integrin alpha 6
Organism
ssco  Scomber scombrus (Atlantic mackerel)
Pathway
ssco04382  Cornified envelope formation
ssco04510  Focal adhesion
ssco04512  ECM-receptor interaction
ssco04514  Cell adhesion molecule (CAM) interaction
ssco04518  Integrin signaling
ssco04810  Regulation of actin cytoskeleton
ssco04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ssco00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133990248
   04514 Cell adhesion molecule (CAM) interaction
    133990248
   04518 Integrin signaling
    133990248
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133990248
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    133990248
   04810 Regulation of actin cytoskeleton
    133990248
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    133990248
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ssco04147]
    133990248
   04515 Cell adhesion molecules [BR:ssco04515]
    133990248
   04090 CD molecules [BR:ssco04090]
    133990248
Exosome [BR:ssco04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   133990248
  Exosomal proteins of breast milk
   133990248
Cell adhesion molecules [BR:ssco04515]
 Integrins
  Integrin alpha subunits
   133990248
CD molecules [BR:ssco04090]
 Proteins
  133990248
SSDB
Motif
Pfam: Integrin_A_Ig_3 Integrin_A_Ig_2 Integrin_A_Ig_1 FG-GAP FG-GAP_3 FG-GAP_2 DUF11
Other DBs
NCBI-GeneID: 133990248
NCBI-ProteinID: XP_062284469
LinkDB
Position
11:11947666..11962521
AA seq 1084 aa
MEGRITCGLWLLVFLCGCGQLSAFNLDTDNVLRKNGDPDSLFGFSLAMHQQLNPVDKKML
LVGAPRAKALSGQKAKVTGGLYSCDMSSTSSACTRVDFDNDEDLTRESKENQWMGVTVNS
QGPGGKIVTCAHRYQSRANVNTALESRDIIGRCYVLSQDLKIYPDAKEDGGYWHFCKGRN
RGHEMFGSCQQGLSATFDKDYHYFIFGAPGAYNWKGVVRLEQNNDTLVEQGIYDDGPFEV
GDESDKNPDWVPAPPNSYLGFSLDSGKSLTKKGQLTVVAGAPRANHSGAVVLLKKGLDTS
KILLEEYTLEGEGLASSFGYDLAVLDLNADGWQDIVVGAPQYFEKDGEIGGAIYVYVNKA
GNWKKVSPIKIVGPQDSMFGQAVENLGDINQDGYHDFAVGAPYDDDGAGTVYIYHGSHQG
LKSKKAAQELSGKPLGVRLFGYSLAGNMDLDKNFYPDLAVGSLSDSIFVYRARPVISIEK
VVQFSPKEIDLTKKNCGKTFCLEVKACFSYTANPKSYSPRLTVAYTLEVDADHRKNGLIP
RATFTQPSTSDNNYMSKGTITLDTKGKEQCVNRQLAVQENIRDKLRGIAIDASVEIQGAT
RKRRQSSTAQLEPILDEIEPKRELVNFLKEGCGKDNVCQSNLQVKYRYGHRSTDEKAFTP
LGSENGVPVISLSDQKDIALEVTVTNLNGDDAHEAKVNASFPSSITYSAYRSPTEEVTCS
ANKDGSYATCDLGNPFKRNSEMTFYIILGTSRISLNTTELEIDLQLLTTSDQKIAPIKAK
AKVAIVLQLSVSGQAQPSQVYFTGKVKGMDAMKTESDIGSAITHQFRIINLGKQLTGLGT
ATLEIEWPKETTDGKWLLYLMKISSTGVHQIGCTPKDEINPLNKEASNTRTRRSTENTKG
SEEGSTSRFIDNRRSKTLSCGNGAKCVKIKCLLQGLDSNAVFTLSSRLWNSTFIEDFSDL
HHLEVIVKASLHVDGTTKNTVLKDAETQVRLTVFPERRAAQYGGVPWWIIVVSILLGLLL
LGLLAFLLWKCGFFKRAKYEEKVPSYNAVRIKREERAVNPGNGKWENLEKKPWMTTWHDN
EHYS
NT seq 3255 nt   +upstreamnt  +downstreamnt
atggagggtaggatcacctgtggactgtggctgcttgtctttctctgtggatgcggacaa
ctgtcggctttcaacctggacaccgacaatgtcctgcggaagaacggggacccagacagt
ttattcggcttctctctcgccatgcaccagcagcttaatccggtggataaaaaaatgctg
ctggttggtgccccgagagcaaaggctttgagcggtcagaaagctaaagtgacaggagga
ctctacagctgtgatatgagctccacatcctctgcgtgcactagagttgactttgacaat
gatgaggatttaacaagagaaagcaaagagaaccagtggatgggagtgacagtcaacagt
caggggccaggaggcaagattgtgacctgtgcccaccggtaccagagcagagccaacgtg
aacacagccctcgaatcccgcgacattattggccgttgctatgtgctgagtcaggatttg
aaaatatatccagatgcaaaagaagacggcggttactggcatttctgtaaggggcggaac
cgaggccatgagatgtttggctcctgccagcaaggcctctcagccacgtttgacaaggac
taccactacttcatctttggagcccctggagcatacaattggaaaggtgtggtacgcttg
gaacaaaataacgataccttggtggagcagggaatttatgatgacggtccttttgaggtg
ggagatgaaagtgataagaatcccgactgggttcctgctcctcccaacagctacctgggc
ttctctctggactcagggaagagtctgaccaagaaaggccagctgacagtggtggcagga
gctccaagagcaaaccacagcggagcagtggtgctgctgaagaaaggcctggatacaagc
aaaattctactagaagagtacaccctggaaggggagggacttgcatcatcttttggctat
gatctggctgttctggatctcaacgcggacggatggcaggacatcgtggtgggagcacct
cagtactttgagaaggatggagaaattggaggagccatctacgtctatgtcaacaaagct
ggaaactggaagaaagtgtcacccatcaaaatagtaggacctcaggactccatgtttggc
caggctgtggaaaacctgggtgacatcaatcaggatggttatcatgattttgcagttgga
gctccttatgacgatgatggtgcaggaactgtgtacatctaccatggatcacatcaagga
ctcaagtctaaaaaagctgcacaggaattatctggcaagcctttaggagtgaggctgttt
ggttactctctggcaggcaacatggacctggataagaacttctaccccgacctggctgtc
ggatccctctccgactctatctttgtatacagagcccgtccagttatcagcatcgagaag
gttgtccagttctcaccaaaagagattgacctcacgaagaaaaactgcggcaaaaccttc
tgcttggaagttaaggcgtgcttttcctacactgccaaccccaagagctactctcccaga
ctgactgtggcgtacacccttgaggtggacgctgatcacaggaagaatggtcttattccc
agggcgaccttcacccagccctccacctcagataataactacatgtccaaagggaccata
actttggacaccaaaggaaaggaacagtgtgtcaaccgtcagcttgctgtacaggaaaat
attcgagacaagctgcgtggaatcgctatcgatgcatctgtggaaatccagggcgccaca
cgtaaacgcagacagagttcaactgctcaactggaacctatcctcgatgaaattgagcca
aaacgagagctagtgaatttcctgaaggagggttgtggcaaagacaatgtttgtcagagt
aacttgcaggtgaaatatcgctacggccacagatcaactgatgaaaaagccttcactcca
ttaggatctgagaacggcgtgcctgtgatctcgctgagcgaccagaaggacattgccttg
gaggtgacagtgaccaatctgaatggagatgatgcacatgaagcaaaagtgaacgcttcc
ttcccatcttccatcacgtattccgcgtatcgcagtccaacagaagaggtaacttgcagt
gccaataaagatggttcatatgccacgtgtgatcttggaaaccccttcaaacgcaactca
gagatgaccttctacattattctgggtacgtcacgcatctctctcaacactactgaactg
gagattgatcttcagctactaacgaccagtgatcagaaaatagcccctatcaaagcaaag
gcaaaggtggccattgttttgcagctgtctgtatcaggacaagcccagccatctcaggtc
tactttacagggaaggtcaaaggaatggatgccatgaagactgaaagtgacattggcagt
gccattacacaccagttcagaataatcaacctgggaaagcaattgacaggtttaggcacc
gccacccttgaaatcgagtggccaaaggagacaacggatggaaagtggttgctctacctg
atgaagatcagctccacaggtgtgcatcagattgggtgcactcctaaagacgagatcaac
cctctcaataaggaggcaagtaacaccaggacgagaagatccacagaaaacaccaaggga
agtgaggagggctctacttcacgttttattgacaatagaagatctaaaacactgtcatgt
ggtaatggggcaaagtgtgtgaagataaagtgcctcctgcagggcctcgacagtaatgca
gtcttcactctcagctctcgtctctggaacagcaccttcatagaggatttctctgatttg
catcatctggaagtgatagtgaaggcctctctgcacgttgatggcacaacgaagaacaca
gtgctgaaagatgctgagacacaggtgagactgactgtgttcccagagagacgtgcagcc
cagtatggaggagtgccatggtggatcatcgtggtgtccatcctgttagggctgctgttg
ctgggcctgctggctttccttctctggaagtgtggcttttttaagcgtgccaaatatgaa
gagaaggttcccagttacaatgctgttcggatcaaacgggaggagagagctgtaaaccct
gggaatgggaaatgggaaaatctggaaaagaagccatggatgacaacctggcatgacaat
gaacattattcttaa

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