Scomber scombrus (Atlantic mackerel): 133990315
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Entry
133990315 CDS
T10651
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03015
mRNA surveillance pathway
ssco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133990315 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
133990315 (acin1a)
03015 mRNA surveillance pathway
133990315 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133990315 (acin1a)
03041 Spliceosome [BR:
ssco03041
]
133990315 (acin1a)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133990315 (acin1a)
Spliceosome [BR:
ssco03041
]
Complex C
Other components
EJC/TREX
133990315 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
133990315
NCBI-ProteinID:
XP_062284576
LinkDB
All DBs
Position
11:7647506..7664857
Genome browser
AA seq
1733 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQRTSTAH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYETNEQEDHTEVNNSTSGP
PQAQDVTPALADQHKPPGPSGGEGLFGAANEGEDNGNQEADMSGPPASGSVPLRVPGGEN
RPDRGAAPSDFVADSDDDDSEDGEEDGDDEDWDSNMRRRSAREPARGPATRERSGASCQP
QQQHIPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPARRSSSSSSSGSSSS
GSRSSSPEPQRSGHAERKPGPLTLLARKMESEGAFSGAGWHGGNGEGDRQDSSLPAAALG
LVSAITHTANTAGHVAFPMIPGTNQGVTGAHSARVQVPVSVLKATATEERDRERDSEIER
EKALELERQEKQRKLEQERALEEERERALALEREERERALEQERFERQQALEREEREKAL
QRERELVLERERLEREQALAKEREEQEQALARERALELERQKELEMQRALEQERLQRERE
ERERREREERERAMELERAKALEREREEREKALEQERLERERALEAVRKEKERIEREKAL
EQERLERERLEREKALEKERIERERAIEQERLERERALEQERLERERALERERIEREKAL
ERERIEKEKALEQERIEREKALEQERLERERAQELERLELERKEKERIAREKALEQERIE
REQALQREREEKEKAEREAALEQERKEKERAEKERKERLELERALEQQKLEREKALEEER
ERERLEKEKAMQKEKEEQERALVQEKERARMAEKERESHLPPSKRGREIGLTSLPTPPPL
STGPGRKSSTEAGAQEDAQAPMSQSDAQATEAGSPMSPTSVSQQSTFKKFRFLRDPPTQP
QPSSTSMVIKRPRTFSDSPQPRVSPVSSLASVGERQQEGPQPSAEQKDSARQEPAVSRPQ
GSVRSQSEEETPVSTTLNPKEEGNTSTGSERKDKAESVATEQAAKESTKKAKDADEGKGP
SSPVDAAQRRGRDSKKEEKPRRQRSSSNDSSSSDWDSGSSSSGSSGSSSSSQEKTCSTSR
GRKEGKPGRHSSPQHRVTAEAQAEGVKETPKASPSKREMPVEKSNTAADRASHTEKLLDA
PTREEIQRKRKDSEEQEEKKDKQRQVTESAMAEPEKLQETSEETPKAFSARKISLSSSKS
SPGTGSAEGEQDSGAAAGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIRPCIGQEAVV
DLHPEEAVLSGAEDEERERSDQDLQIRRTVTQVVHSESQENGQKEAKRSRHEELEEDDLQ
GDGEKTRVHEEKVDTSFPAAMETESPSHTSHDVEINTVTTSDTLIRRSISQQKTGVSITI
DDPVRTARQPSPPRGKVSNIVHICNLVRPFTLGQLKELLSRTGTLVEDGFWIDKIKSHCY
VTYSSSEEAVNTRAALHGVKWPQSNPKVLSVDFCQQDELDFHKGMGAADRPGAEEQGPGS
GRGRASGLPSLLPERDQWAEREREMERREKGRAEREWDRDKVKEFGKPGEEKEGGARRSR
SRERRRKERGKSKEKKTEKKEKAAEDPPAKLLDDLFRKTKAAPCIYWLPLTEEQFVQREA
ARAERMKEREKRRKEQEEEEEEKKKEEERKERMKASGAAATGDRSEGEKDKERDRERDRD
RGRDKDREKERERERERENDKRRDGYRRPGGSSSRAGGGRRSRSRSDPRERRR
NT seq
5202 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtcccttcgtgtggcg
gatttaaaagctgctcttgaagagagagggctttcaaaaagtgggcagaagaatgctctc
attaaaagactcaaaggggccctcatgctggagaatctgcagaggacctcaaccgctcac
atcggactgcagccaaactcacagattggtgaggaaatgagccagaacagctttatcaag
caatatctggctaaacagcaggagctcctgaggcagcgtctggagagagaggctcgcgag
gcatatgaaaccaatgagcaagaagatcacacagaagttaataacagcacctcaggtcct
cctcaagcccaggatgttacaccagcattggctgaccagcacaagccccccggcccatct
ggtggagagggactgttcggtgcagcaaatgagggagaggataacgggaaccaggaggct
gacatgtctggtcctcctgcttctggctctgtgcccttgcgtgttcctggtggtgagaac
cggccagacaggggcgccgcacccagcgacttcgtggcagatagcgacgatgacgacagc
gaggatggcgaagaggatggcgatgatgaggattgggacagcaacatgcgcagaagaagc
gccagagagccagccagagggcccgcgaccagggagaggtctggagcatcttgtcaaccc
cagcagcaacacatcccttcccttttgtctcctcaactccgacagccaacccctcctccc
tccccgcctccagagttatctttccccttgcctgacacccctaagcagagccccccgagt
ccagatgtagcaccagctagacgctcatccagttcctctagctctggttcctccagcagc
ggcagccgcagtagcagcccagaaccacagaggagcggacacgccgagcgcaagcccggc
ccgttgacccttctggcacgtaaaatggagtctgaaggtgccttctctggagcaggttgg
cacggcggcaacggggaaggcgataggcaggacagcagtttgcctgcagctgcattgggt
ttggtatctgccatcactcacacagccaacactgcaggtcatgtggcatttcccatgatt
ccaggcaccaaccaaggtgtcacaggagcacattcggcccgtgttcaagtacctgtgagt
gtgctcaaggccactgcgacagaagagagggacagagagagggactctgagatagaaaga
gaaaaggcccttgaactggaaaggcaagagaagcagaggaaactcgagcaagagcgagcg
ctagaagaagagcgagaaagagctctcgcgctggagagagaggaacgagagagagctttg
gagcaagagaggtttgagcgacagcaggccttagaaagagaggaacgagaaaaggctttg
cagcgggagagggaactcgttctagaaagagagaggctcgagagggaacaagctttggct
aaagagagggaagagcaggagcaggccttggcaagagagagggctctagagctagagagg
cagaaagaacttgagatgcagagggccctggagcaagaacgtctgcagagagaaagagag
gagagggaaaggcgcgagagagaagaaagggagagggcaatggagctagaaagagcgaag
gctttggagcgggaacgagaggagagagaaaaggctctggagcaagagaggttagagagg
gaaagagctttggaggctgtgagaaaggagaaggagaggatcgaacgagaaaaggctttg
gagcaggaaaggttggaaagggaaagattagagagggagaaagcgttggagaaagagagg
atagagagggagagagccatagagcaagaaagactagagagagagagagccttagagcaa
gagagactagagagagagagagccttggagagggaaagaattgaaagagagaaagcctta
gagcgagaaagaatcgaaaaagagaaagctttagagcaagagagaatagaaagagaaaaa
gctctagagcaagagaggttggagagggagagagcccaagagttggagaggttagagctt
gagaggaaggaaaaggagaggattgcaagagagaaagcattggagcaagagaggatagag
agagagcaagccttgcaacgagagagggaggaaaaggagaaggcggagagagaggcagct
ctggaacaggagaggaaggagaaggaaagagccgaaaaggagaggaaagaaagactggag
ctggaaagagctctggagcagcagaagctcgaaagggagaaagccttggaggaggagagg
gagcgagaaagattagagaaggagaaagccatgcagaaagagaaggaggagcaggagagg
gccctggtacaggagaaagagagagctaggatggctgaaaaggagagggagagtcacctc
cctccatccaaacgtggccgtgagattggtctcacctccctgcccacccctccccccctc
tccacaggaccaggtagaaaatcttcgacagaggcgggagcgcaggaagacgcccaagct
ccaatgtcccagagtgacgcccaagcaacagaagcaggttccccaatgtcaccaacatct
gtttcgcaacagtcgacattcaagaagttccggttcttaagggaccccccaactcagccc
caaccctcctctacttccatggtcatcaagaggccccgtaccttctctgatagccctcag
ccccgggtctcacccgtgtcctccttggccagcgttggggaacgacagcaggaaggaccg
cagccctccgctgaacagaaagatagcgcaagacaggaacctgccgtcagcaggccacag
ggttctgtgaggagccagtctgaggaggagactcctgtaagtaccacactgaatcctaaa
gaagaagggaacacaagcacaggatcggagagaaaagacaaagctgagtcagtggcgacg
gaacaggctgccaaggagtccaccaaaaaggcgaaagatgcagatgaaggcaagggtcct
tcaagcccagtagatgctgcacagcggaggggaagagattcaaagaaggaagagaaacca
aggagacaaaggtcatcctctaatgattcctcttcctccgattgggactctgggtcctca
tcatctgggtcctctggctcatcctcatcttctcaagagaaaacctgctccacttccaga
ggcagaaaggaagggaaacctgggagacattcctccccacagcacagggtgactgcagag
gctcaagctgaaggtgtaaaggagactccaaaagcctccccgagcaaaagagagatgcct
gtggagaagagtaacacagctgctgatagagctagtcacaccgagaagctgttggatgca
ccaaccagagaagagatccaaaggaagagaaaagacagtgaagaacaggaagaaaagaag
gacaaacaaaggcaggtgacggagtctgccatggcagagccggagaagcttcaagagacc
agcgaggagacacctaaggccttctccgctcgtaagatctctctcagcagcagcaaatcg
tccccaggcactggcagtgcagagggcgagcaggactctggggccgcggcgggtcgcaag
aggagatggggctccagcacagcagtcactgccaagaaaccttcaatcagcatcaccaca
gattcactcaagtctctgatcccagacatccgaccgtgtataggacaagaggcagtagtg
gacctgcacccagaggaggcagtcctctccggggcagaggatgaagagagggagcgctct
gaccaggatcttcagattcgacgcactgtcacacaggtggtgcactcggagagccaagag
aatggacagaaagaggcaaagaggagcagacatgaggagttggaagaggatgacctacag
ggagacggagaaaagacaagggtccatgaagagaaggtggacacctcttttcctgccgcc
atggaaaccgagtcaccatcacataccagccatgatgtagaaatcaacactgtgaccacc
agcgacaccctcattcgtcgctccatcagccagcagaaaactggtgtctccatcactatt
gacgaccctgtgcgcactgcacggcagccctctccacctcgcggcaaagtctccaacatt
gttcacatctgcaatctggtgaggccattcactctggggcagctgaaggaattgctcagc
agaactggcaccctggtggaggacggcttctggattgataaaatcaagtctcactgctat
gtcacttactcgagctcagaggaggccgtcaacacacgggcagctcttcatggagtgaaa
tggcctcagagcaacccaaaagtccttagcgtagacttctgccagcaggatgaactggac
ttccacaaaggcatgggtgcggccgacagacccggagcagaggagcagggtcctggctcc
ggccgtggtcgagcatcgggcctgccctccctcctcccagagcgagaccagtgggccgag
cgcgagcgtgaaatggagcgcagggagaagggccgggcggagcgggagtgggatcgcgac
aaggtcaaagagttcgggaaacccggagaggagaaagagggaggtgcccggaggtcacgc
tccagagagagacgacgcaaggagagggggaagagcaaggagaagaaaactgagaagaag
gagaaagcagctgaggacccccctgcaaagctgcttgatgacctgttccggaaaactaaa
gcagctccttgcatatactggcttccacttacagaggagcagtttgttcagcgggaagcc
gccagagcagaacggatgaaggagcgtgaaaaacggaggaaggagcaagaggaggaggag
gaggagaaaaaaaaggaagaggaacgcaaggagaggatgaaagcaagcggcgccgccgcc
acaggagaccggagcgagggtgagaaagacaaggaaagagacagagagagggacagagac
cgaggtagagacaaagacagggagaaggagagggaaagggaaagggagagggagaacgac
aaacgcagggacggttaccgtaggccggggggcagcagcagcagggcaggcgggggcaga
cgttcccgcagccgcagcgacccgcgagaaaggcggcgctaa
DBGET
integrated database retrieval system
