Scomber scombrus (Atlantic mackerel): 133990373
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Entry
133990373 CDS
T10651
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
133990373 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ssco01009
]
133990373 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133990373 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
ssco03029
]
133990373 (rb1cc1)
Protein phosphatases and associated proteins [BR:
ssco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133990373 (rb1cc1)
Membrane trafficking [BR:
ssco04131
]
Autophagy
Autophagosome formation proteins
ULK complex
133990373 (rb1cc1)
Mitochondrial biogenesis [BR:
ssco03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
133990373 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
133990373
NCBI-ProteinID:
XP_062284644
LinkDB
All DBs
Position
11:18852562..18867658
Genome browser
AA seq
1631 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAIQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLMKFDTAYLNYQH
DLEEIKVKLTKLGTAVSVMARIPLLECLTRHSYRESMEKSSSTPEKDSDETEEEKSTDSV
RCATDAKRPSKLATSFSASGTATCEPTGDQETNEMTDSGGLRAALLDDDTPELANPSFFN
VTLLDWINVQDRPNDVESVVRKCFDSITRLDPRIIQPFLADCRDTIAKLDNQNMKAIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLMELIERVRV
VDALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKQLYEAEKYKRETFGKLFRKS
FLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLDDLQYLKSCCPVEVQPFLMVPTMCD
FEPLNHHVAKLQQLVKAAQSVDEMSQTITDLLSEQRVSYSQSTQRSTPLTPQSTESPPGT
STSMSSKTPSSLNLQGPSCQPLHVPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQG
SLDLDSLAESPESDFMSAVNEFVIEGNLLSPNPISDPISPEMMVESLYSSVINAIDNKRM
HDTTVLERENFRITVLKQVIEKYRSAAEESHSNLRSVKDDLHHLRGLVLKEQHDFGFVLR
NLTTEVHNIVDNICQTHELELKEQHQSELLSLRQELEKQVHTLTEENQVNQNIVRDVQRA
MLELEGLMERKEKELTQLESEKERWRETESSQTERIKNLEKKISDQAEELKTLSASRDSL
TSQLENLHFEIERGQQKIRQELEVVEQSNLKDLEDRLKQEHKTELETLTKNNQEALEHLA
AENRAKLSEAADHHTTALKEKDKQIKDIEARLTELAELRCKLEVELALKESETEEVRLLF
EEAKMQQTEAIKSQVEVETKVLREELTDIKKQLQVKNEEYEVDLAELRTLMRIEKDNCIS
ELVDRHEEETILLRSELSSLQQQAQDSVRSHDEELQKLQEELEKQVSVQSEEKEFEKEKE
RKHLKSFQELEQELRTVISNLQAENDLLSKKLEQDRQALEKEEAFKVASPDAFKELEQEK
EEMEKRLSDKIRELESKLQDRQSSKSDAGLSLHADSRADAGAPLSLDSALQERLQQERAS
LQIQMDLLEQRKNEEIQNIKTSLIAEQQTNFNTVLTREKLKKEQIINELTEKLRKVTQQQ
EKDKALIETLSEDRASVMQEKKHLEEELNRLRSTALVSSAFFTPNPSAMEVTEAGAGAAA
ATARGLAVAGPSSSEPLAETDRLASVAAIRDDEQVDSAVEASMVTVHDNVLMSEEKQRIL
LLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVL
FTVGPTLYFLHSESLTALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFY
RVKAVPWNRKV
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacgttgacatttgacactgatctc
gctgtccaaactgtactggaacttaaacatgccatccaagccaaatataagattgcaatt
caacatcaagtccttgttgtcaatggaggggaatgtatggctgcagagaggcgagtctgc
agctacagtgctggcactgaaaccaaccccatattcctgttcaacaaagagatgatcttg
tgtgaccgggatccaacgatccccaaaaccaccttctcgattgagagtgagatccaggtt
aaggtggaggagtccctactgatgccagctgtctttcacaccgttgcctcgcgaacacaa
cttgctctggaaatgtttgaagttgccaagaaactttgctctttctgtgaacgtttggtt
catgatgaacacctccaacaccaaggctgggctgctatcatggctaatctggatgactgc
actttgtcctatcagaagttgctcatgaaatttgacactgcatacttaaattatcaacat
gacttggaagaaattaaggtgaaacttacaaagttggggacagcagtttctgtaatggcc
aggatacccttgctggaatgtttgacaagacatagttacagagagagcatggagaagtcc
agttcaaccccagaaaaggattcagatgagacagaagaagaaaaatccactgactctgtg
cgctgtgctactgatgcaaaaagaccttccaagttagcaacatccttctctgcttcgggg
acagccacttgtgagccgactggtgaccaggaaacaaatgaaatgactgacagtggtggg
ctgagagctgccctactagatgatgacactccagagctagccaacccgtcctttttcaat
gtcacactattagactggatcaatgtgcaagatagacccaatgatgtggaatcagtagtg
aggaaatgctttgattccatcaccaggcttgacccacggatcattcaacccttcctggca
gattgtcgtgacacaattgccaagctcgataatcaaaacatgaaagccatcaaagggctt
gaggacaggttgtatgctctagaccaaatgattgcgagctgtaagaagttggtgaatgaa
caaaaagaacttgctcagggatttttggccaatcagaagcgggctgaaaacctgaaagat
acatctgttctgcctgatctgtgtctgagtcacaccaaccagctgatgatcatgctgaac
aaccacaggaagctgctagacatcaaaaagaagtgcaccactgccaaacaagaacttgca
aacaaccttcaagtccgactcaaatggtgctgctatgtgatgcttcatgcagaccaggat
ggagagaagcttcaggctctgctcagacttttgatggagctaattgaaagagtgagggtg
gtggatgccctcagtacggtgccccagatgtactgcctggcggtggtggaagtcgtcagg
agaaaaatgtttatgcgccactacagagagtgggcctatgcacttgtgaaagatggcaaa
caactctatgaggcggagaagtacaaaagggaaacctttgggaaactcttcaggaagtca
ttcctcagaaatcgtttgtttagaggacttgattcgtggcctccaacatcattttgtaca
cggaaaccccgaaggtttgatgatgaacttccagacatctcgcttgatgacctgcagtac
ttgaaatcttgttgtcctgtagaggtgcagcctttccttatggttcctacaatgtgtgac
ttcgagcccttgaatcaccatgtagcgaagcttcagcagcttgtcaaggctgcacagagt
gtggatgagatgtctcaaactataaccgacctgctaagtgaacaaagggtatcctacagt
cagagcacccagagatcaactccactgaccccacagtccacagaaagcccacctgggacc
agcacatcgatgtcctccaaaaccccctcctctcttaaccttcaagggcccagctgccag
cccctacatgttcccgtcccagctcctttagaggacttatctccagacagcattgatgca
cagacatttgactttgaaaccattggccatccaaacatggatccagtcctgcagcagggc
tcccttgacctggattctctagcagagagcccagaatctgacttcatgtctgccgtcaat
gagtttgtgattgaagggaacctgctctctccaaaccccatcagtgaccctattagtcct
gaaatgatggtggagtcactgtattcttctgtcatcaatgctattgacaacaagcgcatg
catgataccacagtgttggagagggagaactttcggatcactgttctcaaacaagttatt
gaaaaataccgatctgctgcagaagagtcccattctaacttaagaagtgtaaaggatgat
ctgcatcacttacgaggtctagtattaaaagaacaacatgactttggctttgtcctgagg
aatttgaccacagaagttcacaacattgtggacaacatctgccagacccatgaactggag
ttaaaggagcagcatcaaagtgagctcctctccctccggcaagagcttgagaagcaagtc
cacacactaacagaggaaaaccaagtaaaccagaatattgtcagggacgtgcagcgtgcc
atgctggagctggagggacttatggagcgcaaagagaaagaacttactcagctcgagagc
gagaaagagcgatggcgtgagacggagagcagccagacagaaaggatcaaaaacctggag
aagaagattagtgatcaagctgaagagctcaagactctctcagcttcaagagactctttg
accagccagcttgagaatctgcattttgagattgaacgtggccagcagaagatccggcag
gagttggaggttgttgagcagtcaaatttgaaggacctggaagacagactgaagcaggaa
cacaagacagaactggagactcttaccaagaataaccaggaggctctggaacatctggct
gctgaaaatagggccaagttaagcgaggcagctgaccaccataccaccgctcttaaagag
aaggacaaacaaatcaaggacatagaggctcgtcttactgagcttgcggaacttcgctgc
aaactagaggtggagttagccctcaaagagtcagagacagaagaggtgaggctcttattt
gaggaggccaagatgcagcagactgaggctataaagtcccaggtagaggttgagactaaa
gtcctccgcgaagagctgacagatatcaaaaaacagcttcaggtgaaaaatgaggagtat
gaagtggacctagcagagctgaggactctcatgaggattgagaaggacaattgcatctca
gagctagtggacagacatgaggaggagaccatcttgttgcgcagcgagctctcctccctg
cagcagcaagcccaggactctgtcaggagccatgatgaggagttacagaaactccaggag
gaattagaaaagcaagtgtctgttcaaagtgaagaaaaggaatttgaaaaggaaaaggaa
agaaagcatttgaagagtttccaagaattggagcaagagttgaggactgttatcagtaat
ttgcaggcggaaaatgacctgctctccaaaaaactagagcaggacagacaagcacttgag
aaagaagaggcctttaaggttgcatcaccagatgcctttaaagagttagagcaggaaaaa
gaggagatggaaaagagactgtcagacaaaattagagaacttgagagtaagcttcaagac
agacaatcctcaaaaagtgatgcagggttgtcactacacgctgacagccgtgcagatgcc
ggagcacctctgtctctagactcagcactacaagagcggctgcagcaggagagggcctcc
ctgcagatccagatggatctcctagagcagaggaagaatgaggagatacagaatatcaag
acatcactaatcgcagagcagcagactaacttcaacactgttctaacccgagagaagctg
aagaaggagcagatcatcaacgagcttacagagaagttgcggaaagttactcaacagcag
gagaaggacaaagctttgatagagaccctctctgaggaccgggctagtgtcatgcaggag
aagaaacacttggaagaagagcttaaccgcctgcgcagcactgctctggtttcctctgcc
ttcttcactcccaacccctcggctatggaggtcacagaagctggagctggagcagcagca
gcaacagccagaggtctggctgtcgctggaccctcttcctctgagcccctggctgaaact
gacagattagcctctgtggcagccattagagatgacgaacaggtcgactcggcagtggaa
gctagtatggtgacagtccatgataacgtcttgatgtcagaagagaaacagcggatacta
ttacttgagaggactttacacatgaaggaagaagaaaacaagcgcctcagtcaaagactg
atgtctcaaagcatgtcgtccgtgtcgtcacggcattcagacaaaatcgccatcagagat
ttccaggtaggcgatttggttctaatcatcctggatgaaaggcatgacaactacgtgctg
ttcacagtcggtcccaccctctacttcctccactcagagtctctcactgcactggacctc
aaaccagcatcagggacctcaaggcggccatgggtgcttggaaaggtgatggagaaagag
tattgccaggcaaaaaaagcccagaacaggttcaaggttcctttaggaaccaagttctac
agagtgaaagctgttccatggaacagaaaagtataa
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integrated database retrieval system
