Scomber scombrus (Atlantic mackerel): 133990404
Help
Entry
133990404 CDS
T10651
Name
(RefSeq) integrin beta-1-like
KO
K05719
integrin beta 1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03271
Virion - Rotavirus
ssco04145
Phagocytosis
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04514
Cell adhesion molecule (CAM) interaction
ssco04517
IgSF CAM signaling
ssco04518
Integrin signaling
ssco04530
Tight junction
ssco04810
Regulation of actin cytoskeleton
ssco04820
Cytoskeleton in muscle cells
ssco05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
133990404
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133990404
04514 Cell adhesion molecule (CAM) interaction
133990404
04517 IgSF CAM signaling
133990404
04518 Integrin signaling
133990404
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
133990404
09144 Cellular community - eukaryotes
04510 Focal adhesion
133990404
04530 Tight junction
133990404
09142 Cell motility
04820 Cytoskeleton in muscle cells
133990404
04810 Regulation of actin cytoskeleton
133990404
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
133990404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssco04131
]
133990404
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ssco04147
]
133990404
04515 Cell adhesion molecules [BR:
ssco04515
]
133990404
04090 CD molecules [BR:
ssco04090
]
133990404
Membrane trafficking [BR:
ssco04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
133990404
Exosome [BR:
ssco04147
]
Exosomal proteins
Proteins found in most exosomes
133990404
Cell adhesion molecules [BR:
ssco04515
]
Integrins
Integrin beta subunits
133990404
CD molecules [BR:
ssco04090
]
Proteins
133990404
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
133990404
NCBI-ProteinID:
XP_062284693
LinkDB
All DBs
Position
11:complement(23161216..23191641)
Genome browser
AA seq
799 aa
AA seq
DB search
MNLQLLLLATLPALLWANRPQQEGSICIKANAQSCGDCIQVAESCGWCTDETFLSEGESK
SARCDDLKSLITRKCDQAKIENPRGKIVIDQDKPVTNRKKDVAEKLSPEQITQIQPQKLS
LTLRSGEPQTFDLKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTDLMKEMQGITSDF
RIGFGSFVEKTVMPYISTTPARLINPCTGNQNCTSPFSYKNVLKLTDKGDRFNQLVSQQQ
ISGNLDSPEGGFDAIMQVAVCEEQIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGK
CHLENDMYTMSHYYDYPSIAHLVQKLSDHNIQTIFAVTEEFQPVYKELKNLIPKSAVGTL
SSNSSNVIKLIIDAYNSLSSEVILENSKLPDGVSITYKSFCKNGVEGTGENGRKCSNISI
GDEVSFKISIESQKCPERVKEEVIKIKLLGFTEEVEVKLNFICNCECSATGEKNSDKCHE
GNGTFECGACKCNDGRIGRLCECSKDEVRTEDLDANCRKDNGTDICSSNGDCVCGTCECK
KRENPAEVYSGKYCECDNFNCDRSGNKLCGGHGRCECRVCICDANYTGSACDCSLDTSTC
LAKNGQICNGRGVCDCGICKCTNPKFQGPTCEICPTCPGVCAEHKDCVQCRAFQAGEKKD
TCQRDCNYFQLMKVKDRDRLPQPTDQSFPLTHCKERDANDCWFYYTYAIRNGTKEVYVVE
NLECPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTGE
NPIYKSAVTTVVNPKYEGK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgaatctacagttacttctgttagcgacgttaccagcgctcctctgggccaacaggccg
cagcaagagggaagcatatgcatcaaggcaaacgctcagtcgtgcggggactgcatccag
gtcgcagagtcgtgtggatggtgcacagatgaaaccttcctctctgagggtgagtccaag
tcggcccgctgcgatgacctcaaatctctgataaccagaaagtgtgaccaggccaaaatt
gagaacccccgcggaaagatcgtgatagaccaggacaagccggtcaccaaccgcaagaag
gacgtggccgagaaactgagccctgagcagatcacgcagatccagccacaaaaactcagc
ctgacactcagatctggtgagccgcagactttcgatctgaaattcaagcgtgctgaggat
taccccatcgacctgtattaccttatggacctgtcattctccatgaaggacgatttggaa
aacgtcaagaacctcggcaccgacctcatgaaggaaatgcagggcatcacctcagatttc
aggatcgggttcggctcctttgtggagaagaccgtcatgccttacatcagcaccactccc
gccaggctcatcaacccctgcacagggaaccagaactgcaccagccccttcagctacaag
aacgtcctgaagctgacggacaagggagaccgcttcaaccagttggtcagtcagcagcag
atctctggtaacctggactctccagaggggggcttcgatgccatcatgcaggtggcggtc
tgtgaggagcaaatcggctggaggaacgtgactcgcctgctggtgttttccaccgatgcc
ggtttccactttgctggagatggcaagctgggcggcatcgtcctgcccaatgatggaaag
tgtcatctggagaacgacatgtacaccatgagccactattatgattacccctccatcgcc
catttggtccagaaactgagcgaccacaacatccagaccatctttgctgtcacggaggaa
tttcagcctgtttacaaggagttgaaaaatctcattcccaaatccgctgttggcacgctg
tcgtccaactccagcaacgtgataaaactcattattgatgcttataattctctgtcatct
gaagtcattctggagaacagcaagctgccagatggagtttcaatcacctacaagtccttc
tgtaagaacggtgtggagggaaccggcgagaacggcaggaagtgctccaacatctccatc
ggagacgaggtgtcctttaagatttccatcgagtctcagaagtgtccagaacgtgtcaaa
gaggaggtcattaaaatcaaactgctgggcttcacagaagaggtggaagtaaaactgaac
ttcatctgtaactgcgagtgctctgcaacgggcgaaaagaacagtgacaagtgccacgag
ggcaacggcaccttcgagtgtggagcctgcaagtgtaatgacggacgcatcgggcgtctt
tgtgagtgcagcaaagacgaagtacgaacggaggatctggacgccaactgcagaaaagac
aacggtacggatatctgcagcagtaatggcgactgtgtctgcggcacctgcgaatgcaag
aaaagagaaaaccctgcagaggtctacagtggaaaatactgcgagtgtgacaacttcaac
tgtgatcgctccggcaacaaactctgtggaggacacggacgctgtgagtgcagggtgtgc
atctgcgacgccaactacaccggcagcgcctgcgactgctctctggacacttccacctgc
ctcgccaagaacggacagatctgcaacggacgcggcgtgtgtgactgcggcatctgcaaa
tgtaccaaccccaaattccaaggtccgacctgcgagatctgtccaacctgccccggagtg
tgcgcggagcacaaggattgcgtgcagtgccgagctttccaggccggtgaaaagaaggac
acctgtcagcgggactgcaactacttccagctgatgaaggtgaaggaccgcgacaggctt
ccccagccaacagaccagagcttccccctgactcactgcaaggagcgcgacgccaacgac
tgctggttctactacacctatgccatcaggaatggtaccaaggaggtctacgtggtggag
aatctggagtgcccggcaggtcctgacatcatccccatagtcgccggtgtggtcgccggc
atagtgctgatcggcctcgccctgctgctcatctggaaactgctcatgatcatccacgac
cgacgagagttcgccaagttcgagaaggagaagatgaacgccaagtgggacacgggagag
aatccgatctacaaaagtgccgtaacaactgtcgtcaatccaaagtacgaaggcaaatga
DBGET
integrated database retrieval system
