Scomber scombrus (Atlantic mackerel): 133990418
Help
Entry
133990418 CDS
T10651
Symbol
nfatc4
Name
(RefSeq) nuclear factor of activated T-cells, cytoplasmic 4
KO
K17334
nuclear factor of activated T-cells, cytoplasmic 4
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04020
Calcium signaling pathway
ssco04148
Efferocytosis
ssco04218
Cellular senescence
ssco04310
Wnt signaling pathway
ssco04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
133990418 (nfatc4)
04020 Calcium signaling pathway
133990418 (nfatc4)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133990418 (nfatc4)
09143 Cell growth and death
04218 Cellular senescence
133990418 (nfatc4)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
133990418 (nfatc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133990418 (nfatc4)
Transcription factors [BR:
ssco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) NF-AT
133990418 (nfatc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
TIG
Motif
Other DBs
NCBI-GeneID:
133990418
NCBI-ProteinID:
XP_062284711
LinkDB
All DBs
Position
11:24979913..24996383
Genome browser
AA seq
906 aa
AA seq
DB search
MGAATGTGWEEGEFEFKLVFEEDPPRQSQGPSPVRTAEPESSGPGEESEVALLHLDSGNS
SSSLVTDNHLAATHVGHSISIPSPPPSANQRAGMHSPPPRRAPVREFSGTYESLPARSVQ
VSESRVVECPSIQITTISPEDDPSTTISSYWDMGGGGGWDRERLYLPLLDPFSYRDRCPG
SLSPSPASSPSSRGWLSPASSCDSLLVEEEELNEATINFGLSPSSRPTSPGGKKRRNSPL
ASPCTSRRGSYSDELQGCNLEGGDSSPQLQALPSSCELSIPQKTRKTSLEQLSSREVDQE
QAPGHSSPCPLPETQQTRREPPSLGMDYLSVPPALAWGRTRASAHSPLFRSNALPPLDWP
LPSQFDQYELRIEVQPRPHHRAHYETEGSRGAVKATPSGHPVVKLCGYTERKPLSLQVFV
GTADDRSIRPHPFYQIHRVTGKMVGTASHESVQAGTKLLDIPLNPENNMTALIDCAGILK
LRNSDIELRKGETDVGRKNTRVRLVFRTHLPLAPPVAPLSRVLALQVASLPIECSQRSAQ
ELPVIESVSLTSCSVEGGEELLLSGNNFLPISRVLLMERGTDGKLHWEEEAHVDRDNSNE
CLLCVRVPAYSDMSVSRPVSVSLYVSNGKRKRSSTHCFKYLPIMFKEEDPLLSRPQVLPL
DGGTVCPVGGQPRMDRGFHVRGDPMADERGLGFHLPPYPSTYSPPCPTIGYQEEYCSKPD
SASEEPGGSRAALSESHPSFENLELGFTELLPPLYPRVPQPPSPSPSPWLDSPYLSSSPS
PSHSSSLSPFPAGSPISTSPLPPIPTSPYPQYSAYPQEMCPSPPSNQNPYQDICPAPYSH
YEGWDPQGRMLGMGHVGERDAKIQECPLEFTNSASMHHITFEEVTEYIGEDIQSYQSGSH
MDNQPN
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgggggctgcgacgggcaccggctgggaggagggagagtttgagttcaagttggtgttt
gaggaggacccgccgaggcagagccagggaccgtccccggtgcgcacagccgagccggag
agctccggacccggggaggaaagtgaagtcgccttgctgcacctggactccggcaacagc
agcagcagcctggttacagacaaccacctggctgccactcatgttggccactcaatcagc
atccctagcccaccaccctcagccaatcagcgggctgggatgcattccccgcctccacga
agggccccagtcagagagttcagtgggacctatgagagcctgccggcacgctctgtacag
gtttcagagtctcgtgtggtcgagtgtccgagcattcagataaccaccatctcacctgaa
gatgacccatcaaccaccatttccagttactgggacatggggggcggaggtgggtgggac
cgcgagcgcctctacctccccctgctggaccccttttcctatcgtgacagatgccccggc
tccctcagccccagccccgcctccagcccgtcctcccgcggctggctcagcccagcctcc
agctgcgactccctgttggtggaggaagaggagctcaacgaggccacaatcaatttcggg
ctctcgccatcctcgaggcctacttcgccagggggtaagaagcgtagaaactcccctctg
gcttccccctgtacttcacggaggggcagttactcggatgaactgcaggggtgcaacctg
gagggcggagactcctcccctcagttacaagctctgcccagcagctgtgagctcagcatc
cctcagaaaaccaggaagacgtcattagagcagttatcttcaagggaggtggatcaggag
caggctccaggccacagctccccctgcccgctgccagagacgcagcagaccaggagagag
cccccctcgctgggcatggactacctctctgtgccccctgctctggcctggggcaggacc
cgagccagcgcccacagtcctctgttcaggtctaatgccttgccgccactcgactggccg
ctgccgtcccagttcgaccagtacgagctgcgaattgaggtgcagccccgtccacaccac
agagcccactacgagacggaggggagccgaggagccgtcaaggctacaccatcagggcat
cctgtcgttaagctgtgtggatacacagagaggaagccgctctcgcttcaggttttcgtc
ggaacagctgacgatcgatccatcaggccacatcctttctatcagatacacagggtgaca
gggaagatggtgggcaccgccagtcatgagagcgtccaggcggggaccaagctgctggac
atccccctcaaccctgagaacaacatgacggcactcatcgactgcgccgggatcctgaag
ttgaggaactcagacatcgagctgaggaaaggcgaaacagacgttgggaggaaaaacaca
cgagtccgtttggtctttcgtacccatctccctctagcgcctcctgttgcacctcttagt
cgggtcctggctctgcaggttgcgtccctgcccatcgaatgctctcagcgttcggcacag
gagctgcccgtcatcgagtctgtcagcctcacttcctgttcggtggaaggaggagaagag
ctcctgctgagcggcaacaactttctgccgatctccagagtccttttaatggagagaggg
acagatggtaaattacattgggaggaggaggctcatgtcgaccgtgacaacagtaatgag
tgtttgctgtgtgtgagggttcccgcctacagcgacatgtccgtcagtcggcccgtttcc
gtcagtctttacgtctccaacgggaagagaaaaaggagcagcacccactgcttcaaatat
ctgcccattatgtttaaagaggaggacccgctgctgtcccggccccaggtgctgcctctc
gatggggggactgtgtgtcctgtgggaggtcaacccagaatggacaggggcttccacgtg
agaggggaccccatggcggacgagagaggcctgggcttccacctgcccccttacccctcc
acctactcccctccgtgcccgaccatcggctaccaggaggagtactgctctaaacctgat
tctgcgtcggaggagcccggcgggtccagggcagccctgtccgaaagtcaccccagcttt
gagaacctggagctgggcttcaccgagctcctaccccctctgtacccccgcgtcccgcag
cctccctccccttccccttccccatggctggactcaccttacctctcctcctcaccctct
ccttcccactcctcctctctcagcccgttcccagccggcagtcccatctccacctcccct
ctccccccgatccccacctccccttacccacagtactctgcctatcctcaggagatgtgt
ccgtcccctccctccaaccagaacccctatcaggacatctgtccagcaccctactcccat
tacgagggctgggaccctcagggaaggatgctggggatgggacatgtgggagagagggat
gcgaagattcaagagtgccccctggagtttaccaactctgcttctatgcaccacattaca
tttgaagaagtgacggagtacatcggggaggacatccagtcttaccagtcgggctcacac
atggacaaccagccgaactga
DBGET
integrated database retrieval system
