Scomber scombrus (Atlantic mackerel): 133990438
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Entry
133990438 CDS
T10651
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133990438 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133990438 (fip1l1b)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133990438 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
133990438
NCBI-ProteinID:
XP_062284741
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Position
2:complement(17012979..17022520)
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AA seq
565 aa
AA seq
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MSAEEADKTTTTDASAGDEEEEWLYGDESESKDEDEEAKLNAAVSAPADASTDDAAGAHA
TGNGVASEATGEAAGEDVDTDSDSDDDDDDVRVTIGDIKTGAPQYTPYGAPPVNLNIKTT
GSRPYGQVTSKMKGVDLDAPGNINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGFNEDT
WKAYCEKQKRLRMGLEVSTVGSVTSKITVQQGRTGNEKDMSSLPVHTSKPDFTSPVSLYK
SAVSQVTRISPPQWTGPPPQDMSYYTMMNTDLTQKTSGTIDVIGGGTATISRVEGRRRHN
LEGNNIQVISEHSTSDTEPAPAKMPAFFPPGPLPPNIPPPPFLPPPPNVSNAPPLIPPPR
LPITVPPPGFPPPPSGPPPAIIPTMDSGHPGSYDGRSVPPYPFPQGAYPPPMAGGVPPPW
PPMMDNSKPWDYYSRRDDKRDKERERPRERTHEREREREHSPSAMGYTSEEERYRYREYQ
ERGYGERHRDRTSREKEERHRERRHREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKK
SKRSKEGKEASEEISADQGNQEAME
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggacaaaacaaccaccacggatgccagcgccggagatgaggag
gaggaatggctgtatggagatgaatctgagagcaaagacgaggatgaagaagccaaactc
aatgctgctgtcagtgcacctgcagacgcttcaacggacgatgctgctggggcacacgct
acagggaatggagtggcctccgaggccactggtgaagcagcaggggaggatgtggacaca
gacagtgacagtgatgacgacgacgacgatgtccgcgtcaccattggagacataaaaacg
ggagcaccacagtacacaccttatggagctccacctgtcaatcttaacataaaaacaaca
ggctccagaccttacggacaagtcacctcaaagatgaaaggagtggacctggatgctcct
ggaaacatcaatggagttccagtgctggaggtggacatggagtcctttgaagagaaaccc
tggaggaagccgggagcggatctgtcagactactttaactacggcttcaatgaagataca
tggaaagcttactgtgagaaacagaagaggctgcgcatgggcctcgaggtctcaactgtc
ggctcagtgacgagcaaaatcactgttcaacaaggcaggacaggcaatgagaaggacatg
tccagtcttcctgttcacacttccaagccagacttcacatctccagttagcctgtacaag
tctgccgtcagtcaggtcaccaggatctctccccctcagtggactggcccgcctcctcag
gacatgtcctattatacgatgatgaatacagacctcacacagaagacgagcggtactata
gatgtgatcggtggagggacggccaccatcagcagggttgaggggcgacgcagacacaac
ttagaaggcaacaatatccaggtgatctctgaacactccacatcggacactgaacctgct
cctgctaagatgcccgccttcttccctcctggaccacttcctccaaacatacctccgccc
cctttcctccctccacctcccaacgtcagcaatgcaccgccgctcatccccccgcctagg
ctgcccatcactgtccctccacctggttttcctcctccacctagtgggccccctcctgct
atcattcccaccatggacagtggccaccctggaagttatgacggacgttctgtccccccg
tacccgttccctcaaggtgcatacccgccacccatggctggaggtgtgccccctccttgg
cccccgatgatggacaactctaagccctgggattactattcccgtcgagacgacaagaga
gacaaggaaagagaaaggcccagggagaggacgcatgagcgggagagagagcgggagcac
agcccctcagcaatgggctacaccagtgaagaggagcgatatcgttaccgcgagtaccag
gagcgtggttacggagagcgccatcgtgaccggacgagcagagagaaggaggagagacac
agagaaaggcggcaccgggagaaggaggagggacgccacaagtcgtctcgcagcagcagt
agcagaaggaggcacgacagcgaggagggcgacagccaccgaaggcacaaacacaagaag
agcaagaggagcaaagaaggcaaagaggcgagcgaggagatcagtgcagaccaagggaac
caggaggccatggagtga
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