Scomber scombrus (Atlantic mackerel): 133990445
Help
Entry
133990445 CDS
T10651
Name
(RefSeq) nucleoprotein TPR-like isoform X1
KO
K09291
nucleoprotein TPR
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133990445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133990445
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133990445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
Motif
Other DBs
NCBI-GeneID:
133990445
NCBI-ProteinID:
XP_062284745
LinkDB
All DBs
Position
11:complement(3887662..3911348)
Genome browser
AA seq
2508 aa
AA seq
DB search
MAAVLLQALERTELNKLPKGAQNKLEKFVTELQSANEALRTQHERYKADSEQQYFDIEKR
LAESQEQFLSSTRDLQTLKEEQKKINEELTTLKGIEGETSEDKPTQQQTKTKYEIEAEKR
ELARLLEKRTHEVENLTEDVKRLNEKLTETNKVKRELMLQLDGIQSTETSVQHREKRMEQ
EKELLEKKIEWLTTELKTKTEEVLNSNRDKGKEILELQGSLKNSKEQVNRLESQLTSLKV
TSESQSKRAADLNNKLKQANDERAAMEEKYRNELNAHVKLSSLYKGQAADMDTKNQELNR
AVEELSKLVKSSGEANKVLEKKVSEGEEVKKRIEAELKEKIKKMEKELENSTTKAAGKHC
CVPSLTEEQLDSMCPSAAAIAAIVKPGMKFFDMYNAYSECQTQLQLEKQETRRVSTVLDE
IVQEVESKAPVLKRQREEYESMQRSMASLCNKLEQARTEIYSLQKEKEEIKQRSDAVERE
KVRTERQLEDTSTQVCNLLVEVEEARGNRVSKGDGSSADISSTTEVNSSRQLSFRSVEEL
QRQNQSLLGRLREVEEENDRRQNQVTSARVSELEASVDKLQKEVEQLREHRNQQKQLADS
NARQRDMFKALLTQSTGFNLPPQGPDSSSQPAQVRPSVPATRSTPQRAAAAESAQTAQTK
AALKQLNDAFTLYKKEKAENDRMLNDTNDRLQRQLTELRSSHAKLTSQLEFSNKRYEMLQ
DNVTAYRREISALQDRNQKMGATAQRHEHIIHTMSQDLRQANEKLALEEVRVENLTKERD
ILRQAESRLNREKEAMLAEQRNQNLLLTNFKSIQLTIERTETDTRQRLNNKIEHLEAELA
SMKTKLEQEVAQRHTLGRTMDAQLLEAKKQLETQNTLYQKTRDLLRSSEQQVTMLRNQLA
SASSSEAVTTSSNAATPATRAAGLRAPFRGAVRSPATAASQQSSQSEQEVAEVKALLRAA
EEQNNELKEQLKNANAGVEQYKSVVLTMEDSVKKEKESRSHLEIRLKESDEVQKQLEKRI
LEVEKKKQQEQEENRKSVDAVEKQVCELQRTLKSSQAEQQEALERAAAAVTLEQKAIQDS
LLQTKLAGEAQAKYERELMLHAADVEALQELKKRSQQEATQKRELEEQLNKTTSLMLEKT
AAWNAMERQLKDDLSSKNRRSDELGTQNNLLHRQMDEMASKSRQQQQQQHQHQLDLSFSE
EGKTTEQILEILRFVRREKEIAMAQCDASEGEALRYKQRVEHQDRELKDLQEAVNAEREK
MQVTVKTLAQQEEQLKKMESINSLQENNKMLKMDRNKLEQELQQAQAKLTKLQSDISPLH
HSLSQLSEKNGSLQADKRILEEDLKRCRARVQQLVSQQKDGDVEERQKVNTEREAQQRRI
TQLIEETAKLKTELARSNASSNSAQSQLQAFRDSVARLTSERDSAKKELETKTSDILEKN
KTITQVKKIGRRYKTQYEELKVQHDKLVEETAAKAGSEAGSSQEVQQELTKAQEELKKAK
EELTSLKEEVQKKQEEAQKSRQESEEAQKEIQQNKDKSQEVQNQLTQNQNQLTQVQSQLS
QAQTQLQQSQKEHQQAKTHTQQVQNQLKSAQSQAQARQNQIQQIQRELQQAKESLQQNLA
SQKELQQTQQSSQQSHNQEVTNLKTALSTADNKVTEVQSQLDNLQKTVAEREADVKRLQE
QLNEANQANEASRASQSSQSIQASDANLASANQAQQEELSKLRQELLDCKNREEHLRQQM
ADKEEKTKKAFMGAKTKINQLNAAKVQLSQEVEELKQSKEDMEARMNALKSQYEGRLLRL
DRELRELRETQTHPDSREEPQDQSGSKVADQARSADQRQISLKSPAQDRGSSSLSEPPTA
NIRPTTSTPSPSNKPSPSQGSKTTPRASIRPMVTPATMPMPTPTATVMPTTQTDSQEGAS
VHSTSTSLVNTASSITQPTSTQTTAFVQPTQQQATNQDASSSVEPERPSTSSSLIGPAGS
KRNREDEEEEEDNRPESSHTPPTSKKLRLRPTMTPQLEGDEEMDEELGDEGERQDSPDDS
QELPEESFPVLNEGDDIDDEGVSQSVPSDQMSFQGSSMIRDVIVIDTDSESRESKEGEEK
QEDDEEEEEEEEEEEEEEEEYKEEEDDDEDEDDAGDSGMRGGEESNEGSREAEDEGAEEE
EPSEGTSAEENVCGASSDSQRPSEPSHSEGSNSATSESDPPRDPVHLPPTSSPSSSSLTP
RLPQPRRPPHPLPPRLYIQPPAQELGPPHTQRQSSQLRRPSTGLQRGGLQLTPGIGSNQH
FFDDDDRMVPSTPTLVVPHRTDGFAEAIHSPQVAGLSTRFRFGPPEDLMSQSSGSHSDLG
QLASQGGLGMYESPLFLAAHDEDGGGRSVPTTPLQVAAPVTVFTESLPSDSADNMASQSV
PMVTASTGMASAADDGDEVFIEQEGDGPGIESSLDSQADMESAGQQSDDASLPSTSQVPD
TSSQRRSQPLISSLSGRGSRGRGDARTLLSRRGNFTRGRGAMGRGSLL
NT seq
7527 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtcctgctgcaggctctggagcggacggagttgaacaaactcccgaaaggc
gctcagaacaagctggagaagtttgtgacggagctacagagcgctaacgaggcgctcagg
actcagcatgagcgctacaaagcagacagcgagcaacagtactttgacatcgagaagaga
ctggcagagagtcaggaacagttcctgtcttccaccagagacctgcagacactcaaagag
gaacagaaaaaaatcaatgaagagctgaccacactgaagggaatagagggagaaacgtct
gaagataaaccaacacagcagcaaaccaagaccaagtatgagatcgaggcagagaagcga
gagctggcgaggctgctggagaagagaacgcatgaggtggagaacctgacagaggatgtg
aagcgtctcaatgagaagctgacagagaccaacaaagtcaagagggagctgatgttacaa
ctagatggaatccagtcaacagagacctctgtacagcaccgggagaagcgtatggagcag
gagaaagagctgctggagaagaaaatcgagtggttaaccacagaactgaagaccaagact
gaagaagtgctcaactccaacagagacaaaggcaaagagatattggagctgcagggtagc
ctgaagaacagcaaggagcaggtgaacagactggaaagtcagctgacctctctgaaggta
accagtgaaagccagagtaaaagagctgcagacctcaacaacaaactcaaacaggctaat
gacgagcgggccgccatggaggagaaataccgcaatgaactcaacgctcacgtcaagttg
tcttcactctacaaggggcaagcagcagacatggatactaagaaccaagaactgaacaga
gcagtggaagagctcagcaagctggttaaaagcagcggggaagccaacaaggtgctggag
aagaaggtgtcagaaggagaagaagtaaagaaacgcatcgaggcagagctcaaagagaag
atcaagaagatggagaaagagctggaaaactctacaaccaaggctgctggcaaacactgc
tgtgtcccctctctcactgaggagcagctggactccatgtgtccttcagcagccgccatc
gctgccatcgtcaaacctgggatgaagttctttgacatgtataatgcgtattcagagtgt
cagactcagcttcagctggagaagcaggagaccaggagagtgagcacggtgctggatgag
atcgtccaggaggtggagtccaaagcgcccgtcctcaaacgtcagcgggaggagtacgag
agcatgcagagatccatggcatcgctgtgtaacaaactggagcaggctagaacggagatc
tacagtttgcagaaagagaaagaggagatcaagcaacgcagtgatgccgtggagagagaa
aaagtgaggacagagagacagctggaggatacatctacacaggtgtgcaatctcctggtg
gaggtggaggaagccagaggtaaccgggtgagcaagggcgacggcagctccgccgacatc
tccagcaccaccgaggtcaacagctcacgccagctgtccttccgcagcgtggaggagctc
cagaggcagaaccaaagcctgctgggaaggctgagggaggtggaggaggagaacgacaga
cggcagaaccaagtaacatcagcacgtgtgtccgagttggaggccagtgtggataaactt
cagaaggaggtggagcagctgagagagcacaggaaccagcagaaacagctggccgactcc
aacgccagacagagagacatgttcaaggctctgctgactcagagcaccggcttcaatctg
cctcctcaaggtccagattcttcctctcaacctgcacaagttcgtccctcagtcccagcc
actcgctccactcctcagagagctgctgctgctgaatctgctcagactgctcagactaaa
gctgctttaaaacagttgaacgatgccttcactctgtataagaaagagaaggcagagaac
gacagaatgttgaacgacaccaatgacaggctgcagaggcagctgacagagctgcgctca
agccacgccaaactcacctctcaactggagttcagcaacaagaggtatgagatgctgcag
gataatgtaacagcctaccgtagagagatctccgcactgcaggacaggaaccaaaaaatg
ggtgcgacggcccaacgacacgagcacatcatccacacaatgagccaagacctgagacaa
gctaacgaaaaactggctctggaagaggtgcgcgtggagaacctgactaaagagcgagat
attttaagacaagcagagagtcgactcaatcgagagaaggaagcaatgctggccgagcaa
cgtaaccagaacctgcttctcaccaacttcaagtcaatacagttgactatagagcgcaca
gagacggacactcgccagcgactgaacaacaagatagagcatctggaggcagagctggct
tcaatgaagaccaaactggagcaggaagtagcacagaggcacacgctcggacgcacgatg
gatgcccagctgttagaagccaagaaacagctggagactcagaacaccttgtaccagaag
accagggacttgttgcgtagttctgagcagcaggtgactatgctgagaaaccagctggcc
tctgcttcatcctctgaggctgtcaccacctccagcaatgccgccaccccggcaaccaga
gcggcaggcctcagagcaccattcagaggcgcagtacgctctccagctacagcagcctcc
cagcagtccagccaatcagagcaggaagtggcagaggtgaaagctctcctgcgtgctgct
gaggaacagaacaacgaactaaaagagcagctaaagaatgctaatgctggcgtagagcag
tacaaatctgtggtactgactatggaagacagtgtgaagaaagagaaagagtcccgctcc
catctggagatccggctaaaggagtcggatgaggtgcagaagcagctggagaagaggata
ttagaggtggagaaaaagaagcagcaagagcaagaagagaacaggaagtctgtggacgca
gtggagaaacaagtgtgtgagctgcagcgcacactgaagtccagccaagcagagcagcag
gaggctctggagagagctgctgctgctgttacactggagcagaaagctatacaggacagc
ctgctgcagactaaactagccggagaggctcaggctaagtacgagcgggagctcatgctg
cacgctgctgacgtggaggccctgcaggagctgaagaaaagatcccaacaggaagcaaca
cagaagagagaactggaggagcaactaaacaaaaccacctccctcatgctggagaagact
gctgcctggaacgccatggagagacagctgaaggatgatttgtccagtaagaatcgtcgc
tccgatgagctggggacacagaacaatctcctgcaccggcagatggacgaaatggcctct
aagagtcgtcagcaacaacaacaacagcaccagcaccagcttgatctgtcattcagcgag
gagggaaagaccactgaacagatactagaaatcctcaggtttgtgcggagagagaaggag
atcgccatggctcaatgtgatgcgtcagagggagaagctctgcgctacaagcagcgagtt
gaacaccaagacagagagctgaaggatctgcaggaagctgtgaacgctgagagggagaag
atgcaggtcacagtgaagactctggcccagcaagaagagcagctgaagaagatggagagt
atcaactctctccaagaaaacaacaagatgctgaaaatggaccgaaataaactggagcag
gagctgcagcaagctcaggctaaactgaccaagctgcagtcagacatcagcccactgcat
cactctttatctcagctgtcagagaagaatggctccctgcaggctgataagaggattctg
gaggaggacctgaaacgctgcagagctagagtgcagcaactggtgagccagcaaaaagac
ggagatgttgaagagaggcagaaagtcaacactgagagagaagctcagcagagacgcatc
acacagctgattgaggagacagctaagctaaagactgaactggccagatccaacgccagc
agtaactcagcccagtctcagctgcaagccttcagagactctgtggcccgtctgacgtca
gagagggactctgcgaaaaaagaactggaaacaaagactagcgacatcctcgagaagaac
aagaccatcacccaggtgaagaagatcggacgccgctacaagacccagtacgaggagctc
aaagtccagcatgacaagctggtggaggaaacagcagctaaagctggaagcgaggcaggt
tcgagtcaggaagtgcagcaggagctcactaaagcccaggaggagctcaaaaaggccaaa
gaggagctgacctcactgaaagaggaggtgcagaaaaaacaggaggaggctcagaagtcc
cggcaggagtcggaggaggcccagaaggaaatccaacagaacaaggacaagtctcaggag
gttcaaaatcagctgacacagaaccagaaccagctgacacaggtgcagtcccagctgtcc
caggcacagactcaacttcaacagagccaaaaagagcatcagcaggccaagacccacacc
cagcaggtacagaaccagttgaaatcagctcagtctcaagctcaggcccgtcagaaccag
atccagcagatccagagggagctccagcaggccaaagaatccctccagcagaacctggct
agtcagaaagagctacagcagacacaacaaagcagtcagcagagccacaaccaggaggtg
accaacctcaagactgctctgagcacagcagacaacaaggtgactgaagtccaaagccaa
ctggacaacctgcagaagacggttgccgagcgtgaagcagacgtcaagcgtctgcaggag
cagctgaacgaagcaaaccaggccaacgaagcgagccgagcctcgcagagctcccagtct
atccaggccagcgacgctaaccttgctagtgctaaccaggcacaacaagaggagctgtcc
aaactcagacaagagctgttggactgcaagaacagagaggagcatctcagacagcagatg
gctgacaaagaggaaaaaactaagaaggccttcatgggagccaagaccaaaatcaaccaa
ctcaacgctgccaaggtgcagctcagtcaggaggtggaagaactgaaacagagtaaggag
gacatggaggcgaggatgaacgctctgaagtctcagtatgaaggaagactacttcgactg
gacagagaactccgagaactgagagagacgcagacgcaccctgactccagagaagaacca
caggaccagagtggatctaaggtggctgatcaggctagatctgcagaccagagacagata
tctttaaagagtccagcccaggacagaggaagctccagcctgtccgagcctcccaccgcc
aacatccgccccaccacgagtactccatctcccagcaacaagccgagcccctcccaaggc
agcaagaccacgccccgcgccagtatccgacctatggttaccccggcgaccatgcccatg
ccgacacccaccgccaccgtcatgccgaccacgcagaccgacagccaagagggagcctct
gttcactccaccagcaccagtctggtgaacacagcctcatcaataactcaaccaaccagc
actcagaccacagcatttgttcagcccacccagcagcaggcaaccaatcaggacgcaagc
tccagcgtggagccagagcgaccatctacatcctcctctctgattggaccagcaggttca
aagagaaacagagaggatgaagaggaggaagaggacaacagaccagagagttcacacacc
cctccaacttccaaaaagcttcgactaagaccaacaatgacaccacagttggagggtgat
gaggagatggatgaagagctcggggatgaaggagagagacaggattctcctgatgacagc
caggagctccctgaggagagttttcctgtcttgaatgaaggggacgacatcgatgacgaa
ggtgtgtcccagtccgtcccctctgatcagatgtccttccagggctcctctatgatcaga
gacgtcatcgtgatcgacacggacagcgagagccgcgagagcaaagagggggaggagaag
caggaggatgatgaggaagaggaggaggaggaagaagaagaagaggaggaggaggaggag
tataaggaggaagaggatgatgatgaagacgaggacgatgcaggtgacagcgggatgagg
ggaggagaggagagcaatgaggggagcagggaggctgaagatgaaggagcggaggaggag
gagccatcagaaggcaccagcgccgaggagaacgtatgtggagcgtcttcagattctcag
cgtccctctgagccgtcacacagtgaaggcagcaacagcgccacgtcagagtccgacccc
cccagagaccccgtacatctcccccctacttcctccccttcctcttcctcactcacaccc
cgcctgccccaaccccgtaggcccccacaccccctccctccacgactctacatccagcct
ccagctcaagaactgggacccccacacacacagagacaatcctctcagctgcgccgacca
tcaacaggacttcagcgtggtggacttcaactaactccaggaataggcagtaatcaacat
ttcttcgatgatgacgacaggatggttcccagcactcccactctggtggtcccacacaga
actgatggcttcgctgaggctatacactctcctcaggttgcaggtctgtccaccaggttc
aggtttggacctccagaagatctgatgagtcagtcatcaggctcacactctgacctggga
cagctggcttctcaaggaggtctgggtatgtatgagtctcctctgttcctggctgctcat
gatgaggatggaggaggaagaagtgtccccactacacctttacaagtggctgcaccagtg
acggtcttcacagagtctctgccctcagacagcgctgacaacatggcatcccagtccgtt
cccatggtaaccgcctccaccgggatggcctcggctgcagacgacggagatgaggtgttc
attgagcaggaaggagacggccctggtattgagtcttcattggacagccaggcagacatg
gagtcagcaggacagcagagtgatgatgcatcacttccatccaccagccaagtccctgac
accagcagtcagcggcgcagtcagcctctgatcagcagcctgtcaggcagaggaagcaga
gggagaggagacgccaggacgttactcagccgcagaggaaactttactcgaggaagagga
gccatgggcagagggagcctcctttag
DBGET
integrated database retrieval system
