Scomber scombrus (Atlantic mackerel): 133990587
Help
Entry
133990587 CDS
T10651
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133990587 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssco03019
]
133990587 (ndc1)
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133990587 (ndc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
UNC-79
Motif
Other DBs
NCBI-GeneID:
133990587
NCBI-ProteinID:
XP_062284931
LinkDB
All DBs
Position
11:26121902..26131273
Genome browser
AA seq
669 aa
AA seq
DB search
MFSAEQSCWFVRKVICWRAAASIAWAVLLLPPTTSVFVILGGFSLFHPIQTISECLTLIG
SASAMLSLILLCGVILMVGFLNLEYYTVIPTIACSRIALLGQLLHPHQFVNSLAHCIMGV
IVAGCCAVIIGGRYETLGYPCTQTDGSPQMCLNEYHLLLLLAGAFVGFSHSLSGVIHNMN
YVSFHAVQQYKYLRFKGSLPLVVKCSATQALYSIRNYIVVYLFLGYIPRAWICKTLDLHL
NSSVHTLDTVTGLLDLSLFYHLWISATFLLFTWYITLLLFRIFVTEVYSFPVQSSFTDVA
LQCLPKVLTDKQPVILKFLALQDLALLSQHSPSRRAEVFSLSQPGGHPHNWNAISKECLS
LLADLTQRLVAYHDTVQTNGRAKSLSTGSERKTSSETSVTSGTEDLMSPRPNLLMKTPAS
VFSRSIVGGPLSPLTAPFTPDLNSPFASPAMRRLTAPAEQCSPWHGSVQSPHIMRRVPKL
WSTSTDSQSNGSPPPSPASVLSPKQESSKPSLLALFLQNRKEQVKHFLGKRVLIMYLFNK
LPEASSQALFADSQAHIWALEGLSYLVEASFSEDQFGVVQTALPSILSCMLVLQEAVDRH
FKLPHASSKPVRSTSSMGESSYKTLRFALRATLKTAIYRITTTFGDHLNAVQMSAEHRKR
LQQFLEYKE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcagagcaaagttgctggtttgtccgtaaggtgatatgttggagagctgcg
gccagtattgcctgggctgtcctcttgttgccacccaccacatctgtattcgtgatcctc
ggcggattcagtctttttcaccccatccagacgatatcagaatgtctgaccctcatagga
agtgcaagtgccatgctctctcttatcctactgtgtggagtgatcctcatggttggcttc
ctgaacctcgagtattatacagtcatcccaacaatcgcatgctcaagaatcgcccttttg
ggtcagctgctccaccctcatcagtttgtcaactccttggcccactgcatcatgggagta
atcgtggccgggtgttgtgccgtcatcatcgggggcagatacgagacgcttggctaccct
tgtacacagactgatggctctcctcagatgtgtctgaacgagtatcacctcctccttctg
ctggcgggagcctttgtgggattttctcacagtctgtcgggtgtgatccacaacatgaac
tacgtttctttccacgctgttcagcaatacaagtaccttcgctttaagggatccttacct
ttggtggtgaagtgcagtgccactcaagcactttactctatcaggaactacattgtagtt
tatttatttttgggttacatcccgagagcatggatctgtaaaacactcgatctccatttg
aacagctccgtccatactcttgacaccgtcactggactgctggacttgtccctgttctac
cacctgtggatcagtgccaccttcctcctcttcacatggtacatcacactgctgctcttc
aggatctttgtcactgaggtgtacagttttcctgtgcagtcgtcttttacagatgttgcc
ctccagtgtcttccaaaagttcttactgacaagcaaccagtgatactgaagtttctagcc
ttgcaggacttggctctgctgtctcaacactccccatcacgacgcgctgaggtcttcagt
ctgagtcaaccaggtggtcatcctcataactggaacgccatcagcaaggagtgtttgtct
ttgctggctgacctcacccagagactcgtagcctatcatgatactgttcaaaccaatggc
agagcaaaatcactgtctacgggaagtgaaaggaagacttcatctgagacgtcagtaacc
tcaggcacagaggatctcatgagtccgaggcccaatttactgatgaaaacaccggcctct
gtcttttcccgctccatcgttggcggccctctgagccctctgacagcaccgttcacccct
gacctgaacagccccttcgcttctccagccatgcggcgtctcactgctccggcggaacag
tgctcaccgtggcacggctccgtgcagagcccccacatcatgaggagagtcccaaaactc
tggtccacctccacagattcacagtccaatggtagtcctcctccatcccctgcctcagtt
ctcagtcccaagcaggaatcctccaaaccaagtctcctggctctgttcctccagaacaga
aaagaacaggttaaacatttcttgggaaagcgggtgctgataatgtatttgtttaacaag
ctcccagaagcctccagtcaagctctgtttgcagacagccaggctcacatctgggcttta
gaggggctttcttacctcgttgaagcctctttctcagaagaccagtttggcgtcgtacag
actgcactacccagcattctcagctgcatgctagtcttacaagaggctgtagatcgacac
ttcaagctgcctcacgcctccagtaagcctgtcaggtcaacgagcagcatgggagaatct
agttacaaaacacttcgctttgctctcagggccacactcaagaccgccatttacaggata
acaaccacctttggagatcacttgaatgctgttcagatgtctgcagagcaccggaaacga
ttgcaacagtttctggagtacaaggaatag
DBGET
integrated database retrieval system
