Scomber scombrus (Atlantic mackerel): 133990596
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Entry
133990596 CDS
T10651
Name
(RefSeq) transcription factor Sox-14
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssco03000
]
133990596
Transcription factors [BR:
ssco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
133990596
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
133990596
NCBI-ProteinID:
XP_062284941
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Position
11:10541176..10541931
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AA seq
251 aa
AA seq
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MNVLPVFEMAKPLDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDS
EKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKSLLKRDRFVFPLPSLLGDAAEHLKGFSM
DSFLVPGDKARALLAPACSSSSSSFSLLEPMGHFSTGAVQRMAEIPHTLSAGALPYSAHT
FGYQTGGIGALACAGQHTHTHSSPTSPGYVMPCNCGAWSAASLQPQVAYILFPGGMTKSG
MDTYTSPSSSV
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcttgccagtttttgaaatggcaaaacctttagatcacatcaagagacccatg
aacgccttcatggtgtggtccagaggccagaggcggaagatggcccaggaaaacccaaag
atgcacaactctgaaatcagtaagagactcggcgcggagtggaagctgctcaccgactcc
gagaagcgtccgtacatcgatgaagccaagagactgcgggctcagcacatgaaggagcac
ccggactacaagtacagaccccggcgcaaacccaagagtctgctgaagagagaccgtttc
gttttcccgctgccgtctctactcggggacgcggcggagcacttgaagggattttccatg
gactcttttctcgtccccggggataaagccagagctctcctggcccccgcctgctcatcc
tcctcgtcgtccttctcactgctggagccgatgggtcacttcagcaccggagctgtccag
cggatggcggagatcccgcacactctgtccgccggagctctgccctacagcgcgcacacg
tttggataccagactggagggattggggctctggcttgcgccggacagcacacacatacc
cactcgtcacccaccagccccggctatgtgatgccatgtaattgcggcgcctggtctgca
gccagtttacagcctcaggtagcttatattctcttccccggagggatgaccaaaagcggc
atggacacgtacacttcacccagctccagtgtgtga
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