Scomber scombrus (Atlantic mackerel): 133990666
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Entry
133990666 CDS
T10651
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco03013
Nucleocytoplasmic transport
ssco03015
mRNA surveillance pathway
Brite
Enzymes [BR:
ssco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133990666
5.6.2.5 RNA 5'-3' helicase
133990666
Messenger RNA biogenesis [BR:
ssco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133990666
mRNA cycle factors
Common to processing body (P body) and stress granule
133990666
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133990666
NCBI-ProteinID:
XP_062285037
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Position
11:11469847..11483882
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AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDSQVNG
PDGVLQNGDDPAVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPNPMTSMNL
PIPFNLVMPPIPPPGYMGQVNGPTTGRGGGMKGKAGSGGGGGNRGGRQRNRGNMGNHSGG
NGGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcccagactctaacgttcctggacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagactcagacccagggccaaacccagagtcagctggacagccaggttaatggt
cctgacggggtgctgcagaatggagacgaccctgcagttaaagccagtcagttgttggcg
gagttgaactttgaggaggatgaggaggacacctactataccaaggatcttcctgtgcat
gcctgcagttactgtgggattcatgatccagcctgtgtggtgtactgcaataccagcaag
aagtggttttgcaacggccgtggaaacacatccggcagccacattgtgaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagacggccctctgggggaaactgtgctg
gagtgctacaactgcggctgccgcaatgtcttcctgctgggcttcatccccgcaaaagct
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcgcagtggcagcctctcattcaggaccgctgcttcctgtcctgg
ctggtcaaaatcccgtcagagcaggagcagctcagggcccgccagatcaccgcccagcag
atcaacaagctagaggaactctggaaggaaaatcccaccgcaaccttggaggatctagag
aagcctggtgtggatgaggagccccaacatgttctgctccgctatgaggatgcctaccaa
taccagaacatatttggtcctcttgtgaagctggaggctgactatgacaagaaactcaaa
gaatcccagactcaagacaacattacagtcagatgggacttgggtctgaacaaaaagagg
attgcttatttcaccctgcccaaaacagattcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggctcctccatggaaaggcattggacatgtcatc
aaagttcccgataactatggtgatgagattgccatagagctgaggagcagcgctggggct
ccagtggagatcccacacaactttcaggtcgactttgtttggaagtccacttcctttgac
aggatgcaaagcgccctgaagacatttgctgtggacgagacgtcagtgtctggttacatc
taccataaactgctgggacatgaggtggaggatgtggtcatcaagtgccagctgcctaaa
cgcttcactgcccaaggattacctgacctcaaccactcccaggtgtatgctgtaaagacg
gtgctgcagcgtcccctcagcctgatccagggtcctcctggcacagggaagactgtaact
tctgccaccatcgtgtaccacctggctagacagggcaacgggccggtgcttgtgtgtgct
cccagtaacattgccgttgaccagctgacagagaagatccaccagactggacttaaagta
gtgaggttgtgtgccaagagcagggaggccatcgactcacctgtgtccttcttggctctg
cacaaccagacccgtaacatggacagtatgccagaacttcagaagctccaacagcttaag
gatgagacaggagagttgtcctcctcagatgagaaacgctacagggctctgagacgcact
gctgagagggagctgctaatgaatgctgatgtgatctgctgcacttgtgtcggggcgggg
gatcctcgtctggctaaaatgcagtttagatcaatcctgattgatgagagcacccaggcc
accgaacctgagtgcatggtgcctgtcgtcctgggtgccaagcagctgatcctggtgggt
gatcactgccagctgggccctgttgtgatgtgtaagaaggcagctaaagcaggtctctcc
cagtctctgtttgagcgcctggtagttttagggatacggccaattcgtctgcaggtccag
taccgtatgcacccggcactcagcgccttcccctccaacatcttctatgagggctccctg
cagaacggagtcactgccggagaccgtgtgaagaaaggctttgacttccagtggccgcag
cctgacaagccgatgttcttctatgtcacccaaggccaagaggaaattgccagctctgga
acatcatatctcaacagaactgaggcagccaatgtggagaaaataaccaccaggttgttg
aaggctggcgcaaaacctgatcagatcggcatcatcaccccttatgagggacagaggtct
tacctggtccagtacatgcagttcagcggctccctccataccaaactgtaccaggaggtg
gagatcgccagtgtggatgctttccaaggcagagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatccacgtcgcctcaacgtg
gcgctcactagggccaggtatggtgtgatcattgtgggaaaccccaaagctctgtccaag
cagcccctgtggaaccacctgttgaactactacaaggagcagaaggtcttggtcgagggt
ccccttaacaacctgagagagagcctcatgcagttcagcaagcctcgcaagctggtcaac
accataaaccctgggggtcgatttatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtttacgatcgcagcagcaacgggcgcacatccaacatgtatttccag
acccatgaccagattggtatgattggcacaggccctaatcccatgacttccatgaacctc
cctatccccttcaacctagtgatgccccccatacctccacctgggtacatgggacaagtc
aacggacccacaacaggtcgtggtggtggtatgaaaggcaaggcaggcagtggaggaggt
ggcggcaacagaggtggccgtcaaagaaaccgcggcaacatggggaaccacagcggaggg
aacggagggcagcatggaggccatatgagcggcagtcaggccagccaggacctgggctcc
cagcctttctcccaggggcctctgacgcagggctacatcaacatgagccagccgtcacag
atgagccagcctgggctctcccagcctgaactctcacaggacagttacctaggagacgag
tttaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgggcc
taccaacacggtggtgtgactggactgtcccagtactag
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