Scomber scombrus (Atlantic mackerel): 133990720
Help
Entry
133990720 CDS
T10651
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
133990720 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssco01002
]
133990720 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133990720 (shhb)
Peptidases and inhibitors [BR:
ssco01002
]
Cysteine peptidases
Family C46: hedgehog family
133990720 (shhb)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Morphogens
133990720 (shhb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DrmE_C
Hom_end_hint
VldE
Vint
DUF6212
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
133990720
NCBI-ProteinID:
XP_062285104
LinkDB
All DBs
Position
11:complement(1395549..1401082)
Genome browser
AA seq
410 aa
AA seq
DB search
MVLMRVMLSLSLCLLLASAGSGCGPGRGYGKRRPPRKLTPLALKQFIPNVAEKTLGASGK
YEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQWPGVK
LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYESKAHI
HCSVKAENSVAAKSGGCFPGSAMVILADGRIKPLKELQVGDRVLAADQQGNLLPSDFLMF
MDQDRQIKRQFHVLVTEEPHRKLTLTPAHLVFVLNNNSTDRGDTRAVFASNVKPGQRLLV
VGNDRPGHLIPSTVRQVYVEQHEGSYAPVTSHGTIIVDQVLASCYAVIEDHQLAHWVFAP
VRLWRYFSSLVGMVKELSSVHQADGVHWYPELLYHVGSQLLDSGSFHPQS
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggtcctgatgagagtgatgctgtcgctgtccctctgcctgctgttggcgtccgccggc
tcgggctgcggaccgggcagaggatacgggaagcggaggccccccagaaagctgacaccg
ctggctctgaaacaattcatacctaacgtggcggagaaaaccctgggagccagcggcaag
tacgaaggcaagatcacccgcaactcggagaggttcaaagacctgactcccaactacaac
cccgatatcatttttaaagatgaggagaacacgaacgcagaccggctcatgacacaaagg
tgtaaggacaaactgaactctttggctatttcagtcatgaatcagtggcccggggtgaaa
ctccgggtcacagagggctgggatgaggatggccatcactctgaggagtctctgcactat
gagggccgagcggtggatattaccacctcagaccgggataagagcaagtatggcatgctg
tccaggctggctgtggaggctggctttgactgggtttactatgagtccaaagcccacatc
cactgctctgtgaaagcagaaaattcagtggcagctaagtctggaggttgttttccgggt
tctgctatggtgatcctggcagatggaaggatcaaaccactgaaggagctccaggtgggg
gacagggtgctggctgctgaccaacaaggaaatctccttcccagtgactttctgatgttc
atggaccaggaccgacagattaaacgacagttccacgtcctagtgactgaggagccgcac
cgtaaactgacgctgactcctgctcatctcgtctttgttctgaacaacaacagcactgac
agaggcgacaccagggccgtgttcgccagtaatgtaaaaccaggacagcggcttctggtt
gtcgggaacgaccgacccggacacctgatcccctcaacagtgagacaagtttatgtggag
cagcatgaaggctcctacgcacctgtaacatctcatggaaccatcattgtggaccaggtg
ttggcctcctgttatgcggttattgaggatcatcagcttgcacactgggtattcgctcca
gtacgactttggcgttatttctcgtcactggttggaatggtgaaagagctcagcagtgtg
caccaagctgacggtgtccactggtacccggaactcctctaccatgtgggaagtcagctt
ctggacagcggttcttttcacccacaaagctga
DBGET
integrated database retrieval system
