Scomber scombrus (Atlantic mackerel): 133990830
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Entry
133990830 CDS
T10651
Name
(RefSeq) polycystin-1-like protein 2
KO
K04988
polycystin 1L2
Organism
ssco Scomber scombrus (Atlantic mackerel)
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ssco04040
]
133990830
04091 Lectins [BR:
ssco04091
]
133990830
Ion channels [BR:
ssco04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133990830
Lectins [BR:
ssco04091
]
C-Type lectins
Others
133990830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Lectin_C
SUEL_Lectin
Ion_trans
REJ
GPS
SAGA-Tad1
Motif
Other DBs
NCBI-GeneID:
133990830
NCBI-ProteinID:
XP_062285255
LinkDB
All DBs
Position
1:complement(20335783..20355560)
Genome browser
AA seq
2511 aa
AA seq
DB search
MGSSAFPTLILTVLFLSWTCYAEDDPEALSCPEHQEGFDGSCYEFVGLQQSFLSAQGWCE
RGGGHLAFILNDETQQFLQKHLEMEKNWWLGLAPAAPNLTLDSTASEGSLAWLDGSDVSY
NNWVNMPDEQADCGHILRQSGFQWEATGNCSQELNFICQFDSGKSIACDGQNSTLQCGSG
QVIEIDDSFYGRKTIHYCRSILSTSPTSSQEECSWIDVVDSVTAHCRGLQACQAPVDLSS
FGEPCPLLGSYLSVEYHCKHGLHLLMSKLAAVFDNVTITVKWLLHPFQGNLTCTLNAGDG
HTIDPYSPEEMESTVIHKFKHPGVFMVGVECTTSDWHVTAQKAITIQEPVGEFVAIECYG
WNITAGGTKCNAHFGRPVQIQVVVEAGTNVSYTIQHKGHLVAKSSLDRGITPHNITLSAS
AVEQLGHGCYNLTLTASNRVTAHTVSTELELCLQEPVEGLQASLQAEDGECPDSDDLIIR
VSLEQGAPVQLLFSLTGASDTISETRNMPNESLQFYTFASPIEGLMKVKVRAMNAFSASD
ADVDMEHILQACNNFSDFSSEERENATDDMSDDDIYDLKINDTPETLVDYNQSVTLTVNG
SDSLPSKGLTFKWKCKKNCKCSEHAMNKTHIIDKDCLPNPFEIIKYSVTVRKTSWFRRPV
NLASASKCITVAPKEFTDITISCDNCTSINVNSRVKLRLRCVTTCPEIVWYIEDPTPLTG
SFKNCYSRAGRRPPIEKQNGSTEFIVHSRFLKVSRDTLQNISVIAYGKKEPGFAKYTLPI
PGPEPTEPVPTETSVDHSTASCSIFPLSGTVLDAFDITCKASPFCSTGCLYCFKTDTGKH
LRCSNANEVKSVFLPLGDKNNNYSLSVVVTVKNEYKKATTTVTTQVRKSDSSTSVEILQS
AVKDTVTQLEKQGLLSGEALGQIFTSVSDMLNTETGEDQRDARTKLREQMLTKMTTVLLD
SPPNTSQEVQVTARAVAGLTQRSDELTPSAQEEAGSLLVDLSSSLNAISVNQDGGDDGEV
AQAATPIVEAASNILNVSSTKKVSDFLLTGINNVQSALLNNKKLNGDPAIIDSGQISVYV
NRVSPGTMRMQDINVQKNSSSRFSFPTLPADVLFPEEPVDVRMMSFEKNPYAWKEENITG
TVGSLSLTRVNGTVIPVENLPDEIEILLPRLDVGQENSTVLDLANFSTLIIDVPSPDVTL
VLKMEPSEDISFMLFLGYKDYPSDENYVAKTQIPLENAKEEEKYTWVLGPEHRTGDVGVH
FLVMKPVVEPGVKSINATVNVITIAAQCKYWNETQSSWSEDGCRVSAKINKVFDPLLVFF
FLQVGPLTTPLVTQCLCNHLTFFGSSFFVMPNLVDVSRTAELFATFTNNPVVVCFVGAIF
AAYIMVVVWARRKDILDSAKVKITVLEDNDPLAEYRYMLTISTGHRHGASTSSQVTITLL
GTEGESEPHHLTDSEKPVFERGGVDMFLLTTHFSLGELQSIRLWHDNSGVHPAWYVNKVM
VQDLESGQKWHFLCNSWLAVDVGECSLDKVFPIATEEDLKRFSNLFFMKTAKDFRDGHIW
FSVISRPPCSTFTRVQRVSCCFSLLLCTMLTSIMFWGIPTDPSEQTMDLGHIEFTWQQVM
IGFQSSIIMFPINLLIVSIFRNTRPREKAAKTDTSKQGKTGRVSPSQTSSPQKEQKDITP
DTVIKDIKRIAQSLSKAMKSPLTHVELRPGQPADINTLLSLVEDIIRQQNRATGDFYNDA
SKSERSMILSLGAVNLQENSMWNSPERTSDGVQKKRTNSRYLYRQLRHVEKELGLLGPSR
FPNPDSYIRAMQQVQGMKSLLEYHLPSSSMEGDQLDRSPSPEESIKGYTNKKCCQGGLPW
WFVFVGWILVIATSGVSGYFTMMYGLTYGKDRSISWLISMMVSFFESLFITQPLKVLGFA
AFFALVLKKVDQEEYGEPQMDDSLKNSDDTDAVRAARRDSTCSFYQPPPPTDIEKMRSNI
IKEQKVFALIREILTYMGFMWMLLLVAYGQRDPNAYFLTQHIRQSFSKGISDSMSIQDVF
NWANTTLLSNLFGDHPGFITDGNSKLVGNARLRQVRVQKNSCTIASSMQQSVQDCHAPYS
WELEDMDSYDPGWSPSVADNTSQSLHSPWKYQSQGKLRAYPIWGSVMLYRGGGFVVDLGP
DLQNSSRSLQYLYDNTWLDVYTQAIFVEFTVYNANVNLFCIVTLMLETTAIGAFQFRSEL
QSVRLYQSTGGLHIFVMASEAIYFLFIIYYMFVQGKLMKQQKLTYFKTKWNLLELAIIIL
SWSALSVFIKRTLLGKRDMDFYQNNKHLYASFHETAKADAVLGYLIAFLVLLATVKLWHL
LRLNPKLHMITATLQRAWTDISGFLVVMTIMFLAYSIASNLMYGWKLYSYRTLLDAAQTM
VSLQLGIFNYEEVLNYNPVLGAFLIGSCIVFMTFVVLNLFISVILVAFSQEQIHHKPSEE
EEIVDLMLMKLGSLFGLKCKKQGGDSPTDRPDISSATNNGLSTISLGHHKG
NT seq
7536 nt
NT seq
+upstream
nt +downstream
nt
atgggcagctctgctttcccaacgctgattttaactgttctcttcctcagctggacttgt
tatgctgaggatgatccagaggctctctcctgcccagaacaccaggagggctttgatggc
tcatgctatgaatttgtgggtctgcagcaatccttcctcagtgcccagggatggtgtgaa
cgaggtggaggacacctagccttcatcctgaacgatgaaacacagcagttccttcagaag
cacctggagatggagaagaactggtggctcgggctggcaccggcggctccaaacctcaca
ctcgactctacagcctctgagggttcccttgcatggctggatggctcagatgtcagctat
aataactgggtgaacatgccagatgaacaagcagactgtggacatatcctgagacagtca
ggcttccagtgggaagccacagggaactgtagccaggagctgaacttcatttgccagttt
gattctgggaaatctattgcatgtgatggacaaaattctacattgcagtgtggttctggt
caggttatagagatagacgacagcttctatggccggaaaacaattcactactgccgatcc
atactttccacctcacctacatcttcccaggaggagtgcagctggatagatgtggtagat
tctgtgacagcccattgccgtggactgcaggcttgccaggctccagtggatctgagctca
tttggtgaaccctgtcctttgctgggaagttacctgtcagtcgagtaccactgcaaacat
gggctccacttattgatgagtaaactggcagccgtctttgataatgtcaccatcactgtg
aagtggctccttcatccatttcaaggaaacctcacatgcacactgaatgctggagatggc
cacactattgatccgtacagcccagaggagatggagagcacagttatacacaaattcaag
catcctggtgttttcatggtcggagtggaatgcactaccagtgactggcatgttacagct
cagaaagcaataaccattcaggaacctgttggagaatttgttgccatcgagtgctatggc
tggaacataacagcaggtggcactaaatgcaatgcacattttggcaggcctgttcaaatt
caggttgtggtggaggcaggaacaaatgtttcttacacaattcaacataaaggccatttg
gttgcaaagtcatcattggacagagggatcacaccacacaacattacactgagtgcaagt
gcagtggagcagctcggacacggctgctacaacctgactctaacagcctctaacagggtc
acagcccacacagtgtccactgagctggagctgtgtctgcaagagcctgttgagggacta
caggcctcattacaagcagaggatggtgagtgtccagactctgatgatctcattatccgt
gtttcactggagcaaggagcccctgtacagcttctcttctctctgactggagccagtgac
actatctccgagaccagaaacatgcccaacgaaagcttacaattttatacattcgccagc
ccaattgaaggacttatgaaagtgaaagtacgagccatgaacgccttctcagcctctgat
gctgatgtggacatggagcacatactccaggcttgcaataatttctctgacttttcatca
gaagaacgtgaaaatgcaacagatgatatgagtgatgacgacatctatgacttgaaaatc
aatgatactccggaaactttggttgactacaatcagagtgtcacactgacggttaatgga
agtgattcattacccagcaaaggactcacatttaaatggaaatgtaaaaaaaactgcaaa
tgcagtgaacacgcaatgaataaaactcatattattgataaggattgcctcccaaatcca
tttgagataatcaaatacagtgtaactgtgaggaaaacaagctggtttaggaggccggtt
aaccttgcttcagcttctaaatgcatcactgttgctccaaaggaattcacagacatcacc
atcagctgtgataattgcacttcgataaatgtgaacagccgcgtaaagctaagactgcgc
tgcgtgacaacttgtccagaaatagtttggtatattgaggaccccacgcctttgacaggt
agcttcaaaaactgttactccagagcaggacgaaggccacctattgagaagcagaatggc
agcactgaatttattgtacacagccgctttctaaaagtttcaagagacacgttgcaaaac
atcagcgtgattgcttatggcaagaaggagccaggttttgccaagtacactctaccgata
ccaggtccagagccaacagaaccagtacctactgagacgtctgtggaccacagcactgcc
tcttgtagcatctttccactgtctggaacagtgctcgatgcttttgatatcacctgcaaa
gcaagtcctttctgctctacaggctgtctttactgcttcaaaacagacactggcaaacat
ctgcgctgcagcaatgcaaatgaggtcaaatctgtcttcctgcctcttggagataagaac
aacaattacagcttgtctgttgtggtgactgtaaaaaatgagtacaagaaagctaccacg
actgtcaccactcaggtacgaaaaagcgactccagtacctctgtggagattctccagtct
gcagtgaaggacactgtgactcagttagagaaacaaggtctgctctccggtgaggcactt
ggacaaatattcacttcagtgtctgatatgctaaacacagagactggcgaagatcagagg
gatgcgaggacgaagcttagagagcagatgctgaccaaaatgaccacagttctgctggac
tccccccccaacacaagtcaagaagtgcaagtgacagccagagctgtggctggactcacc
cagcgctcagacgagctcactccctctgctcaagaagaagcgggttcattgttggtcgac
ctcagctcctccctcaacgctatcagtgttaatcaggatggtggcgatgatggagaagtt
gcacaagcagctacaccaatagttgaagcagccagtaatatattgaatgtttcttcaact
aaaaaagtctcagattttctacttactgggataaataatgttcagagtgctttgttgaat
aataagaaactaaatggagaccccgccatcattgattctggtcagatcagtgtgtatgtc
aacagagtgtctccaggaaccatgcggatgcaggatatcaatgtccaaaagaacagctca
tccagattttcctttcctactctgcctgctgacgtcctctttccagaagaaccggtggat
gtgaggatgatgagttttgagaagaatccatatgcttggaaagaggaaaacatcacagga
actgtaggatctctctctcttaccagagtcaatggtacagtcatccctgttgagaacctg
cctgatgagatagagattctccttccgaggcttgacgttgggcaggagaacagtaccgtt
ttggatctggccaatttcagcacattaataattgacgttccctcacctgacgtaacactg
gtgctgaaaatggagccctctgaagacatttccttcatgctattcctgggatacaaagat
tatccaagtgatgagaattatgttgccaagactcagatccctcttgagaacgcaaaagaa
gaggaaaaatatacctgggtgctgggtcccgaacacagaacaggagatgttggagtgcac
ttccttgttatgaagcctgttgtagagccaggcgtcaaatccatcaacgccactgtcaat
gtcattaccatcgctgcccagtgcaagtactggaatgaaacacagtcttcttggagtgaa
gatgggtgcagggtgagtgcaaaaattaacaaagtttttgatccactgctggttttcttt
tttctacaggttggtcctctcactacacctttggtcactcagtgtctctgtaaccactta
acattctttgggagctctttctttgttatgccgaacttggtggatgtgtcacgcacggca
gaactttttgctacctttactaacaatcctgtggtggtgtgtttcgtgggggccatcttt
gctgcttacatcatggtggttgtgtgggcacgtaggaaagatatcctggactcagctaag
gtcaagataacagtgcttgaggataatgaccctttggctgagtatcgctacatgttgact
atcagcacagggcatcggcatggtgcatccacctcctctcaggtgacaataactttgctg
ggcacagaaggagaaagtgagcctcaccacctgacagactctgagaagcctgtgtttgag
aggggaggggtggacatgtttctgctgactacacacttttccctcggagagctgcagagc
atcaggctgtggcatgacaactctggagttcatcctgcatggtatgtcaacaaagtgatg
gtgcaggatctggagagtggtcagaaatggcactttctgtgtaactcctggctggctgta
gatgtgggagagtgctctcttgacaaagttttcccaatagcaacagaggaggatttgaag
agatttagtaatctgttcttcatgaagaccgccaaggatttccgtgacggccacatctgg
ttctctgtcattagtcgacctccctgcagcacctttacccgtgtgcagcgggtgtcctgc
tgtttttctctgctgctgtgcaccatgctgactagcatcatgttttggggcatccccaca
gacccctctgagcagaccatggacctgggtcatatagagttcacctggcagcaggttatg
attggatttcaaagttcaatcatcatgtttcccatcaatctcctcattgtgagtatcttc
agaaacactcgtccccgagaaaaagccgccaaaacagacacgtctaagcagggaaagact
ggccgagtctctccctcacagacttcttcccctcagaaagagcaaaaggacatcacacca
gacactgtgatcaaggacataaagagaattgctcagtcactgtcaaaggccatgaagagt
ccacttactcatgtggagctgagacctggtcagccagctgatatcaacacgctgctgtct
ctggtggaggacatcatcaggcagcagaaccgagcgaccggagacttctacaacgacgcc
tccaagagtgaacgctctatgatcctcagcttaggtgcagtcaatctacaagagaacagt
atgtggaacagccctgagaggacttcagatggggttcagaagaagagaaccaacagcagg
tatctctacaggcagctgcgtcatgttgagaaggagctgggtttgctgggaccttcacgt
tttccaaacccagacagctacatccgagccatgcagcaagttcagggaatgaagagtctg
ctggagtaccacctcccctcatccagcatggaaggagatcagcttgatcgcagccccagt
ccagaggagagcatcaaagggtacactaacaagaagtgctgtcaaggggggctgccatgg
tggtttgtctttgttggctggattctggtgattgcaaccagcggtgtgtcaggatacttc
accatgatgtatggactgacatatggcaaagaccgctctataagctggctcatctccatg
atggtctccttctttgagagtctgtttattacccaacctctgaaggttcttggttttgct
gctttcttcgctcttgttctgaagaaagttgaccaggaggagtatggagagcctcagatg
gatgatagtctcaaaaactcagatgatactgacgcagtgcgagcagcaagaagagacagc
acatgcagtttctatcagccaccacccccaactgacatagagaagatgaggagcaacata
attaaagagcagaaagtcttcgccctcattcgggagattctgacctacatgggattcatg
tggatgttgctcctggtggcatacggccagcgagaccccaacgcttacttcctgacccag
catatacgtcagagcttcagcaaagggatctcagacagtatgagtattcaagacgtgttt
aactgggcaaacacaactctgctgagcaacctgtttggagatcacccaggattcatcact
gatggaaactcaaagttggtgggtaacgcacgtcttcgccaggtgagggtgcagaaaaac
tcttgcaccattgcttcctccatgcagcagtctgtgcaggactgtcacgctccatactcg
tgggaattggaggacatggactcttatgatcccggctggagcccctctgtggctgataat
acctcacagagtcttcacagcccgtggaaataccagtcccagggtaaactgagggcctac
cccatctggggcagcgtgatgctttacagaggaggagggtttgtagtggatctggggcca
gatttacaaaactccagcagatcccttcagtacctttatgacaacacctggcttgacgtg
tacacccaggccatctttgtcgagttcactgtgtacaacgccaacgtcaacctcttctgc
attgttacactcatgctggagaccacagccataggggctttccagttccgcagtgagctt
caaagtgtgcgtctttaccagtcaaccggtggccttcacatctttgttatggcctctgaa
gccatctacttcctcttcattatatattacatgtttgttcagggaaagctgatgaagcag
cagaaattgacttatttcaagactaagtggaacctgctcgagctggcgatcatcattctc
agctggagcgctctgtccgtcttcatcaagaggactttactggggaagcgggacatggat
ttctaccagaacaacaaacacctatatgctagtttccatgagacagccaaggctgatgca
gtgctggggtatctgattgccttcctggtgctgctggctacagtcaaactgtggcacctg
ctgagactcaaccccaagctgcacatgatcacagcaacactgcaacgagcctggactgat
atctcaggcttcctggtggtcatgaccatcatgttcctggcctactccattgcttctaac
ctgatgtatgggtggaagctgtactcctatcggactctgcttgatgctgctcagaccatg
gtcagcctgcagctgggcatttttaactatgaagaggttctgaattacaatccagtgctg
ggtgctttcctcatcggctcctgcattgtgtttatgacctttgtggtgctgaacctcttc
atctctgttatcctggtggcattcagtcaagagcagatacatcataagccatcagaggag
gaggagattgtggacctgatgctgatgaaactcggcagtctgtttggactcaaatgtaag
aaacaaggtggcgacagcccgactgataggccagatatttcatctgctacaaataatgga
ctctcaacaatttctttgggacatcacaaaggttga
DBGET
integrated database retrieval system
