Scomber scombrus (Atlantic mackerel): 133990846
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Entry
133990846 CDS
T10651
Symbol
tnn
Name
(RefSeq) tenascin-N
KO
K06252
tenascin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133990846 (tnn)
04518 Integrin signaling
133990846 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133990846 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133990846 (tnn)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133990846 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
EGF_2
EGF_Tenascin
Fn3_VIN3
Arylsulfotran_N
DUF7949
hEGF
EGF
Motif
Other DBs
NCBI-GeneID:
133990846
NCBI-ProteinID:
XP_062285236
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All DBs
Position
11:14982144..15011815
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AA seq
1296 aa
AA seq
DB search
MTTRFLWRALSLLAILCTISRFSSADNHLDPSAPEQGVTFSHVYKIDIPGSTSCKLERLP
AQDEAGLQTETTVNGENDITFRHNLRLQMPQCDCTESESFKSLLYRVNGLEEEVNYLKTQ
CAQGCCGRGGAAGVDTSCSGHGTYQHDTCSCLCNPGWEGPDCSESSCPDECNDNGRCVDG
KCVCHQGYTGDDCSQLMCPDNCNDKGHCVDGKCVCFPHFTGEDCSIQKCPNDCIGNGRCV
DGLCICDEGFYGEDCSLVFGPQGLRLVRVTDVSLLVEWESARGADYYILTYYPKGDQSTL
QQVRIPNTENSYLITGLIPGVTYIVQVYAVIKEIQSEADRIEATTDVSAINDIRVLGQTE
VSIKVDWKNPQAEVDHFRLTHTDPAGQEEEMNIQRSQEARTKHTIVGLYPGTEYLISVQA
IKGTTEGKSSSVTGATDIDAPTKLVTTEVTEDTATVSWDRVQAEIDGYMLSYTSDEGSSS
EIPVGRDSTSYRLVGLRPGVLHTVYIWAYKGDKVSRKTSTEAETELDAPTNVLTQDETET
SVRVSWDRVQAEIDGYVLTYSSSESSSGEIPVGADSTSYLLTGLRPGVLYTVYIWAVKGS
KASMKISTQAETELDAPSNLLARDETESSFSVSWDRIQAEIEGYVLTYSSSEGFSGEIPL
GPDSTSYSLNGLRPGVLYTVYIWAVKGNKASRKISTQAETELDAPANLLARDETESSFSV
SWDRIQAEIDGYALTYSSSEGFSGEIPLGPDSTSYSLNGLRPGVLYTVYIWAVKGNKASR
KISTQAETELDAPANLLARDETESSFSVLWDRVQAEIDGYVLTYSSSEGLSGEIPLGPDS
TSYSLNGLRPGVLYTVYIWAVKGSKASRKISTQAETELDAPANLLARDETESSFSVSWDR
VQAEIDGYIITYSSSDGSSGEIPVGPDSTSYSLTGLRPGVLYTVFVWAIKGIKASRKIST
EAETDIDAPRDLKATDVTLESASLTWMPPLADIEGYILTYRAEDSPMETVEKQLGAGESS
FAVSSLEMGKRYIVTIIAYKGNKRSKVVETIFRTVGLLYPFPMDCVQIMKNGNTKSGIYT
VYINNNRSKPIQAYCDMDTDGGGWLMLQRRTTGRLDFMKRWRQYIAGFGNMTDEFWIGLD
KIYELTNTPTQYEVRFDLGVGSERAYAVYDNFQIAPVKQKFKLTIGKYSGNAGDAMTYHQ
GRPWTTVDSDNDIALGNCALTHRGAWWYKNCHLANLNGKWGDTRHSMGVNWEPWKGHLTP
LDFTEMKIRPVGALSSRKRRSLMAREKSRNTILQKK
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgaccactagatttctgtggagggccttgagcctgctggccatactctgcaccatctca
cgcttcagctccgccgacaaccacctggacccctcagctccagagcagggagtcaccttc
agccacgtctataaaattgacatcccagggagcaccagctgcaaactagagcgcctgcca
gcccaggatgaagcaggtctgcagacagagaccactgtgaatggagagaatgacatcacc
ttcagacacaacctcaggctgcaaatgccccagtgtgactgtacggagtcagaaagcttc
aagtctcttttgtacagagttaatgggttggaagaagaagtcaactacctgaagacccag
tgtgctcagggatgttgtggaagaggtggcgctgcaggtgtggacacaagctgtagtggc
catggtacctaccaacatgacacctgcagctgcctctgtaaccctggatgggaaggccca
gactgctcagagtcctcctgccctgacgaatgcaatgacaatggccgttgtgtggatggg
aagtgtgtctgccatcagggctacacaggagatgactgcagccagcttatgtgtccagac
aactgcaacgacaagggacactgcgtggatggaaaatgtgtgtgcttcccgcacttcact
ggcgaggactgcagcatccagaaatgtcccaatgactgcattggtaacggccgctgtgtg
gatgggctgtgcatctgtgatgaaggcttttatggggaggattgttcattagtcttcggt
cctcagggtctgcggctggtccgggtgactgacgtctctctcctggtcgagtgggagtct
gctcgtggggcggactattacattctgacatattatcccaaaggtgatcagagtaccctg
cagcaggttcgaattcccaacacagaaaactcatacctcatcacaggactgattcctggg
gtcacctacattgtccaagtatatgctgtcatcaaagaaatccaaagtgaagcagacaga
attgaggctaccacagatgtatccgctatcaatgatatccgagttcttggtcagacagaa
gtctctatcaaggtggactggaagaacccacaagctgaagtggatcacttcaggctcaca
cacactgacccagcagggcaagaggaagaaatgaacatccagaggagtcaagaggcacga
accaaacacactattgtgggtctgtatccagggacagagtatctgatctcagtgcaggct
atcaaaggaaccactgaaggaaaatcttcttctgtcacgggtgccacagacattgacgct
cctacaaaacttgtcaccaccgaggtaacagaggacactgcaaccgtttcatgggatcga
gtccaggcagaaatagatggctatatgttgagctacacctctgatgagggttccagttct
gagatccctgtaggacgagacagcacctcttacaggctggttggcttgaggccaggagtt
ctccacactgtctacatctgggcctacaagggagataaagtcagcaggaagacgtcaaca
gaagctgaaacagagctggacgctcctactaacgtcttgacgcaagatgaaacagagacc
agcgtcagagtgtcttgggatcgtgtccaagcagaaattgatggctacgtcctaacctac
agctcttctgagagctctagtggggaaatcccagttggggcagacagcacctcttacttg
ctgactggcctgaggcctggagtcctctacactgtctacatctgggccgtcaagggaagc
aaagccagcatgaagatctcgacacaagctgagacagaactggatgctccttctaacctc
ttagcccgagatgaaacagagtccagcttcagtgtatcatgggatcgtatccaggcagaa
attgaaggctacgtcctaacctacagctcctctgagggctttagcggggaaatccctctg
ggaccagacagcacctcttacagtctgaatggcctgaggcctggagtcctctacactgtc
tacatctgggccgtcaagggaaacaaagccagcaggaagatctcgacacaagctgagaca
gaactggatgctcctgctaacctcttagcccgagatgaaacagagtccagcttcagtgta
tcatgggatcgtatccaggcagaaattgatggctacgccctaacctacagctcttctgag
ggctttagcggggaaatccctctgggaccagacagcacctcttacagtctgaatggcctg
aggcctggagtcctctacactgtctacatctgggccgtcaagggaaacaaagccagcagg
aagatctcgacacaagctgagacagaactggatgctcctgctaacctcttagcccgagat
gaaacagagtccagcttcagtgtattatgggatcgtgtccaggcagaaattgatggctac
gtcctaacctacagctcctctgagggccttagtggggaaatccctctgggaccagacagc
acctcttacagtctgaatggcctgaggcctggagtcctctacactgtctacatctgggct
gtaaaaggaagcaaagccagcaggaagatctcgacacaagcggagacagaactggatgct
cctgctaacctcttagcccgagatgaaacagagtccagcttcagtgtgtcatgggatcgg
gtgcaggcagaaattgatggctacatcataacctacagctcctctgatggctctagtggg
gaaatcccggttgggcctgacagcacctcttacagtctgactggcctgaggcctggagtc
ctctacactgtcttcgtctgggccatcaagggaatcaaagccagcaggaagatttcaaca
gaagctgagacagatattgatgccccgcgggacctgaaggccacagatgtgacactggag
tctgcttctttgacctggatgcctcctctggctgacattgaggggtacatcctcacctac
agagctgaggatagccccatggagactgttgaaaagcagctcggagctggtgagagcagt
tttgctgtatctagtctagagatgggcaagagatacatcgtcaccattattgcttacaag
ggaaacaagaggagcaaggtggtagagaccatcttcagaacagttggtcttctctaccca
ttccccatggactgtgttcagatcatgaagaatggcaatacgaagagtggtatttacact
gtctatatcaacaataaccgctccaaaccaatacaagcctactgcgacatggacactgat
ggaggcggctggctgatgctgcagcgccgtaccactggcaggttggactttatgaaacgc
tggagacagtacattgcaggttttggcaacatgacagacgagttttggattggtttggat
aagatatatgagctcaccaatactcctacccagtatgaagtgaggtttgacttgggcgtt
ggatcagagagagcatacgctgtgtacgacaactttcagatcgccccggtcaagcagaag
ttcaaactcacaatcggcaaatacagtgggaatgcaggtgatgctatgacctaccaccaa
gggcgaccctggacaactgttgactcagataacgacatcgccctgggtaactgtgccctg
actcaccgtggtgcttggtggtacaaaaactgtcaccttgccaacctcaatggaaaatgg
ggtgacaccaggcacagtatgggagtgaactgggaaccatggaagggccacctaacaccc
ctcgacttcacagagatgaagatacgacctgtgggagccttgtctagccggaaaaggcga
tcgttgatggctagagagaagagcagaaacacaatcctccaaaagaaatag
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integrated database retrieval system
