Scomber scombrus (Atlantic mackerel): 133990848
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Entry
133990848 CDS
T10651
Symbol
tnr
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
ssco Scomber scombrus (Atlantic mackerel)
Pathway
ssco04510
Focal adhesion
ssco04512
ECM-receptor interaction
ssco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ssco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133990848 (tnr)
04518 Integrin signaling
133990848 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133990848 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssco00536
]
133990848 (tnr)
Glycosaminoglycan binding proteins [BR:
ssco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133990848 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
FN3_Tor_3rd
EGF_2
EGF_Tenascin
Fn3_Dep-1_2nd
Fn3_VIN3
Interfer-bind
DUF4998
GH101_dom-5
DUF7949
Motif
Other DBs
NCBI-GeneID:
133990848
NCBI-ProteinID:
XP_062285239
LinkDB
All DBs
Position
11:complement(15052535..15126097)
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AA seq
1438 aa
AA seq
DB search
MRSSHLLKLDKGTLLQLMAVNRTVPAGFVHLTPSSSTRFSFVWCEWTGLQFLLSMPLAQQ
HHRATVPTTGWILVLALFLALQAATHAAPAGDNKLVRTTRVKRQTPGGDQPPSASPANQT
LWEQPVVFNHVYNINVPLESLCSVDLDASAPLASGSRAELGSRPSVEGPMDPTGPAEYTE
QTLDTDSQVTFTHRINIPKAACGCPATITIQQLATRVEMLEREVSLLRAQCGSGCCGESS
AMGRLDFFPGCSGHGSFSLDLCGCICEEGWTGKNCSEPRCPDDCSGQGICIEGECVCDRD
FGGENCSEPRCPSDCSGRGLCIDGECVCEESFTGEDCMVGRCLNDCSDQGLCINGTCQCR
PGYVGEDCSLVYCANNCSKKGVCKDGFCVCQDGFAGDDCNSVAPAMNLKIRGVTDRTITL
EWEGSVVLTDFLVTYTPSSPGGVQLEIRIPGNTTTCTITGLEAGMEYNINVFAVINSTIS
VPASITISTYLSNPDGLVFKSITETSVEVRWQPFFYSFDGWEISFIPKDNDGGMTAQLPS
TITSFVQTGLRPGEEYTVNLVALRDQGRSQPVTAIVSTLIDGPTQLIVRDVSDTVAFVEW
TPPKAKIDQIVLRYGLVGGEGPRTTFRLQPTLSQYSLQVLRPGSRYEVTVSGVRKGNESG
SISTEFITALSFFSEIDAPKNLRLVSKTSTTLELEWDNSEAEVDAYQVVYSTLAGDQYEK
VIVPKNEGATTKTTITDLLPGTEYGIGISAMRGSNQSTPATMNARTDLDVPMDLTVTAST
DNTITLVWGVVQGPIDHYKVTYTSSSGVTTELTVPKDVTSTILTDLEPGTEYTITVAARR
GRQQSTAATIDAFTGIRPVTHLYLSEMTSDSVLVAWSAPAPPADLFILSYSSADGTDTSK
VTLDGSKTRSLVQGLLPSTHYTISLITIQGDVTSEPITASLTTGMDPPKELAVSDVSEDA
VTISWIRPLAPFEYYKLSYQSARGRVDSVVIDSDVTNYTLSSLFPATEYEISLNAVRGSQ
ESKVVTTSVFTAMDMPSELTALNITPQGALLRWNPPMSSVDNYVLTLTHNQVTADTFLVE
GNKQEHQLSNLKPSTTYSVGLYATKGPLTSGTVITNLQTPMDAPVNLTASEVNHRSGLLS
WQPPMAEIDNYMLTYKSTEGSRKELILDAEDTWIRLEGLAETTEYTVKLQAARGLDTSAV
VSTTFITGSRLFATPQNCAQHLLNGETLSGVYTIYINRDPSQGVQVYCDMTTDEGGWIVF
QRRQNGLTDFSRKWSDYRVGFGNLEDEFWLGLDNIQRISAQGRYELRIDMKDGQESVYAN
YDKFSIGDAKNLYKLRIGEYNGTAGDSLSYHQGRPFSTKDRDNDIAVTNCALSYKGAWWY
KNCHRANLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPFNFRSISSKRRRSAPV
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgcgttcgagccacctactgaagttagacaaagggacactgcttcagctaatggctgtg
aacaggacggttccagctggctttgtccatctcactccttcatcatctacacgcttctca
tttgtttggtgtgagtggacaggactgcagtttcttctcagcatgccactggcacagcag
catcacagggccactgtgcccacaacaggctggatcctggttttggctctgtttcttgct
ctacaggctgccactcatgctgctccagcaggagacaataagcttgttcgtactaccaga
gtgaagagacagaccccagggggggatcagcccccctccgcttccccagccaatcaaacc
ctttgggagcaacctgtggtctttaaccacgtctacaacatcaatgtacccttggagtct
ctttgctcagtcgacctggacgcctctgcaccgcttgcctcaggttctcgtgctgagctg
ggctccagaccctctgtggagggtccaatggatccaacaggaccagcagagtacactgaa
cagaccctggatactgacagccaggtaacattcactcaccgcatcaacatcccgaaagca
gcatgtggttgtccggcaacaatcacaatccagcagcttgccacgcgggtagagatgctg
gagagagaagtttccctacttagagctcagtgtggatctggttgctgtggggaaagctcc
gccatgggacgtctagactttttcccaggctgcagtggccatggcagcttcagccttgac
ctatgtggctgtatctgtgaggaaggttggactggcaaaaactgctctgaaccccgctgc
ccagacgactgctccggccagggcatatgcatagaaggggagtgtgtgtgtgaccgtgac
tttggaggtgaaaactgctcagagccacgatgcccatcagattgctcgggccgtggtttg
tgtattgatggggagtgtgtgtgcgaagagtcttttactggcgaagactgcatggtcggg
aggtgtctcaatgactgctcagaccaagggctgtgtatcaatgggacgtgccagtgccgg
cctgggtatgtgggagaggactgctcactggtctactgtgccaacaactgcagcaagaag
ggagtctgtaaggatggattctgtgtctgccaggacggttttgctggagatgactgcaat
tctgtggcacctgccatgaacctgaagatacgaggggtgacggatcgaacaattaccctg
gagtgggagggatcagtggtgctgacagatttcttagtaacctacacaccaagcagccct
ggaggtgtacaactagaaataaggattccagggaatactaccacctgcactatcacaggc
ctggaagcaggcatggagtacaacatcaatgtgtttgctgttattaacagcactatcagc
gtccctgccagcattactatttcaacctacctctccaatcctgatggtttagtcttcaaa
tccatcacagagacgtcagtggaggtccgttggcaaccatttttctattctttcgatgga
tgggagatcagcttcatccccaaggacaatgatggaggaatgactgcacaactgcccagc
accatcacctcctttgtgcaaactggtctgaggccaggagaggagtacacagttaatctg
gtggcgctccgtgaccaaggacgaagccagccggtcactgctattgtctcaacattgatt
gatggacctactcagctgattgtgcgggatgtgtcagacactgtggcgtttgtagagtgg
actccaccaaaagcaaagattgatcagattgtgctgcgttatggccttgtgggaggagag
gggccaaggaccaccttccgcctccagcccacactcagccagtattccctgcaggttctg
cgtcctggctctcgttacgaggtgacagtgagtggtgtgaggaaaggaaatgagagcgga
tctatttccactgaatttattaccgctttatcgttcttctcagagatcgatgcccccaag
aacctgcggctggtatccaagacctccaccaccctggagctcgaatgggataacagcgag
gctgaggtggatgcctaccaggtggtgtacagcactttagcaggagatcagtatgagaaa
gtcatcgtaccaaaaaatgagggagccacaactaagaccactatcacagacctgctgcca
ggcacagaatatggtattggcatttctgccatgagaggcagcaaccagagcacaccagcg
actatgaacgccagaacggacctggatgtgcccatggatctaactgtgacggcctctaca
gacaacaccatcactctggtttggggcgtggtccagggccccatcgaccactataaagtc
acctatacatcttcttccggcgtgactactgagctgacagtgcctaaagatgtaacctcc
accatactgacagaccttgagcctgggactgagtacaccatcacggtagctgcaaggaga
ggaagacaacagagcactgcagctactatagacgccttcacagggatcaggcctgtaacc
cacctctacttgtcagagatgacttcagactctgtgttggtggcatggagtgctccagca
ccacctgctgacctcttcatcctgagctacagctctgcggacgggaccgacacctctaaa
gtgacactggatggctccaagacgaggtcactggtccagggcctgctgccgtccactcat
tacaccatcagtctaatcacaatacagggggatgttacctctgagcctattacagcatca
ctcaccacaggcatggatccaccaaaagagttggccgtctcagatgtgagcgaggacgca
gtgactatctcatggatcagaccactggctccatttgagtactataagctgtcctatcag
tcagccagaggtcgagtggacagcgtggtgattgacagtgatgtcaccaactacaccttg
tccagtctgtttcctgctacagaatatgaaatcagtctcaacgctgtcagagggagccaa
gaaagcaaagtggtcaccacctccgtcttcacagcaatggacatgccatctgagttaaca
gccctcaacatcactcctcaaggagccctgctgaggtggaatccccctatgtccagtgtc
gacaactatgtgctgaccctcacacacaaccaggtgacagccgatactttccttgtggaa
ggcaacaagcaggagcaccagctgtccaaccttaagccaagcaccacctactctgtaggc
ctctacgccacaaagggaccccttaccagtggcactgtcatcactaacctacaaacaccc
atggatgcacctgtgaacctgacagccagtgaagtgaatcaccgcagtggtctcttatcc
tggcaaccgccaatggcagaaattgacaactacatgctcacctacaagtcaaccgaaggc
agccgtaaagagttgatcctagatgcagaagacacctggattcgtcttgagggactggct
gagactacagagtacacagtcaagctccaggctgcaagaggattagacaccagtgctgta
gtctccactaccttcattacagggagtcgactgtttgcaacacctcagaattgtgcccaa
cacctgctgaatggagagacgctcagtggtgtctacaccatttacatcaacagagacccc
agccagggtgtgcaagtgtactgtgacatgactactgatgaaggaggctggattgtattt
cagcgacgtcagaacggcctgacagacttttccaggaagtggagtgactatcgggttgga
tttggaaacctggaggatgagttctggcttggtctagacaacatccagaggatttctgct
cagggccgttatgagctgaggattgacatgaaggacggacaggagtcagtttacgccaat
tatgataaattctctattggagatgctaaaaacctctacaagctcaggataggggagtac
aatggcaccgctggtgactctctgagctaccaccagggccggcccttctctacaaaagac
agagacaatgacatcgctgtcactaactgtgccttgtcctacaaaggtgcctggtggtac
aagaactgccaccgggccaacctcaacggcaaatacggcgagtccagacacagtcagggt
attaactggtaccactggaaaggccacgagttctctattccctttgtggagatgaagatg
aggccgttcaacttccgtagcatcagcagcaagaggaggcggtctgcccctgtataa
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integrated database retrieval system
